Jatropha Genome Database

JcCA0142841.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0142841.20 + phase: 0 /pseudo/partial
         (366 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57940.1 | Symbols:  | unknown protein | chr3:21449560-214558...   421   e-118
AT1G10490.1 | Symbols:  | unknown protein | chr1:3453589-3459925...   414   e-116

>AT3G57940.1 | Symbols:  | unknown protein | chr3:21449560-21455834
           FORWARD
          Length = 1028

 Score =  421 bits (1083), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/375 (60%), Positives = 258/375 (68%), Gaps = 16/375 (4%)

Query: 1   MRKKVDERIRTLIENGVKLRHRSMFVIIGDKSRDQARHFHKIMELEACFITCXVS-QWXN 59
           MRKKVDERIRTLIENGVKLRHRSMFVIIGDKSRDQ  + H +  L    I C  S  W  
Sbjct: 1   MRKKVDERIRTLIENGVKLRHRSMFVIIGDKSRDQIVNLHHM--LSKAVIKCNPSVLWCY 58

Query: 60  PGQLSYGATRTNLNLAVTRKREQSRXKSXCRGDCWXXXXXXXXXXXXXXEDXHIACTRIL 119
             +L   + +   +  + R RE+ +     + D +              +D      RIL
Sbjct: 59  KDKLDISSHKQKRSKQLKRLRERGQLDP-EKLDAFSRLLDVGRVTHCLYKD----SERIL 113

Query: 120 K--------EYLEILLECAYCRTIETVEGGGXXXXXXXXXXXXXXXYTMVMDVHDRFRTE 171
                    +  E L      RTIETVEGGG                TMVMDVHDRFRTE
Sbjct: 114 GNTFGMCILQDFEALTPNLLARTIETVEGGGLVVLILRSLTSLTSLCTMVMDVHDRFRTE 173

Query: 172 SHSEAAGRFNERFLLSLASCKACVVMDDELNILPISSHMRSITPVPVKEDSEGLSEAERD 231
           SHSEAAGRFNERFLLSLASCKACVVMDDELNILP+SSH+RSIT VP ++DSEGLSEAERD
Sbjct: 174 SHSEAAGRFNERFLLSLASCKACVVMDDELNILPLSSHIRSITQVPTEKDSEGLSEAERD 233

Query: 232 LKNLKEQLHDDFPVGPLIKRCCTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSXXX 291
           LK+LKE L DDFPVGPLIK+CCTLDQGKAV+TF DAILDK LRS VAL+A+RGRGKS   
Sbjct: 234 LKSLKEDLSDDFPVGPLIKKCCTLDQGKAVVTFFDAILDKALRSIVALIASRGRGKSAAL 293

Query: 292 XXXXXXXXXXXYSNIFVTAPSPENLKTLFEFICKGFDVLEYKEHIDYDVVKSVNPEFKKA 351
                      YSNI++TAPSP+NLKT FEF+CKGFD LEYKEH+DYDVVKS NP+FKKA
Sbjct: 294 GLAVAGAVAAGYSNIYITAPSPDNLKTFFEFVCKGFDALEYKEHLDYDVVKSANPDFKKA 353

Query: 352 TVRINVYKQHRQTIQ 366
            VRIN++KQHRQTIQ
Sbjct: 354 VVRINIFKQHRQTIQ 368


>AT1G10490.1 | Symbols:  | unknown protein | chr1:3453589-3459925
           FORWARD
          Length = 1028

 Score =  414 bits (1063), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/381 (59%), Positives = 259/381 (67%), Gaps = 28/381 (7%)

Query: 1   MRKKVDERIRTLIENGVKLRHRSMFVIIGDKSRDQARHFHKIMELEACFITCXVSQWXNP 60
           MRKKVDERIRTLIENGVKLRHRSMFVIIGDK+RDQ  + H I  L    +        NP
Sbjct: 1   MRKKVDERIRTLIENGVKLRHRSMFVIIGDKARDQIVNLHHI--LSKSVVKS------NP 52

Query: 61  GQLSYGATRTNLNLAVTRKREQSRXKSXCRG-------DCWXXXXXXXXXXXXXXEDXHI 113
             L     R +++ +  +KR +   K   RG       D +              +D   
Sbjct: 53  SVLWCYKNRLDIS-SHNKKRAKQLKKMKERGQLDPEKLDAFSLFLDVVDVTHCLYKD--- 108

Query: 114 ACTRILK--------EYLEILLECAYCRTIETVEGGGXXXXXXXXXXXXXXXYTMVMDVH 165
              RIL         +  E L      RTIETVEGGG                TMVMDVH
Sbjct: 109 -SERILGNTFGICILQDFEALTPNLLARTIETVEGGGLVVLLLQSLASLTSLCTMVMDVH 167

Query: 166 DRFRTESHSEAAGRFNERFLLSLASCKACVVMDDELNILPISSHMRSITPVPVKEDSEGL 225
           DRFRTESHSEA+GRFNERFLLSLASCKACVVMDDELN+LP+SSH++SIT VP KEDSE L
Sbjct: 168 DRFRTESHSEASGRFNERFLLSLASCKACVVMDDELNLLPLSSHIKSITKVPTKEDSEAL 227

Query: 226 SEAERDLKNLKEQLHDDFPVGPLIKRCCTLDQGKAVITFLDAILDKTLRSTVALLAARGR 285
           SEAERDLK+LK+ L+DDFPVGPLI +CCTLDQGKAV+TF DAILDKTLRS VAL+A+RGR
Sbjct: 228 SEAERDLKSLKDALNDDFPVGPLINKCCTLDQGKAVVTFFDAILDKTLRSIVALIASRGR 287

Query: 286 GKSXXXXXXXXXXXXXXYSNIFVTAPSPENLKTLFEFICKGFDVLEYKEHIDYDVVKSVN 345
           GKS              YSNI+VTAPSP+NLKT+FEF+CKGFD LEYKEH++YDVV+SVN
Sbjct: 288 GKSAALGLAVAGAVAAGYSNIYVTAPSPDNLKTVFEFVCKGFDALEYKEHLEYDVVRSVN 347

Query: 346 PEFKKATVRINVYKQHRQTIQ 366
           PEF KA VRIN++KQHRQTIQ
Sbjct: 348 PEFNKAIVRINIFKQHRQTIQ 368