Jatropha Genome Database

JcCA0142031.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0142031.20 + phase: 0 
         (169 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00525.1 | Symbols:  | unknown protein | chr4:231862-232769 F...    86   1e-17

>AT4G00525.1 | Symbols:  | unknown protein | chr4:231862-232769
           FORWARD
          Length = 140

 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 70/119 (58%), Gaps = 7/119 (5%)

Query: 49  MAKKILEYRSTFPNQLEVTLASVLSAQRPFLPSMDSGSDLGPAGEFNPGLEEQVNSSKPT 108
           MAKKI EYR T P+ L  TL S LS+  P  P++DSGSD  P+       E QV    P 
Sbjct: 27  MAKKISEYRQTLPDHLRNTLDSALSSHIPVFPNIDSGSDPLPSSCLTIA-EAQV----PG 81

Query: 109 SLTEGDQKITEKVRLLKDKISSNVSAMPTVLNRMKECMSKIDNLDSHVGTLHPFSKKKK 167
            L E D +  EK   LK+++S N + +P V+ RM+EC+  ID LDS   T+HP  K+++
Sbjct: 82  VLEEQDSE--EKWIQLKERMSRNAANIPKVVKRMRECIESIDKLDSLEVTIHPAFKRQR 138