Jatropha Genome Database

JcCA0141541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0141541.10 - phase: 0 
         (392 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32140.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   563   e-161
AT3G07080.1 | Symbols:  | membrane protein | chr3:2241360-224293...    85   8e-17

>AT4G32140.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           endomembrane system, membrane; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 13 growth stages; CONTAINS
           InterPro DOMAIN/s: Protein of unknown function DUF6,
           transmembrane (InterPro:IPR000620); BEST Arabidopsis
           thaliana protein match is: membrane protein
           (TAIR:AT3G07080.1); Has 1078 Blast hits to 1078 proteins
           in 273 species: Archae - 20; Bacteria - 294; Metazoa -
           244; Fungi - 147; Plants - 41; Viruses - 0; Other
           Eukaryotes - 332 (source: NCBI BLink). |
           chr4:15523037-15525195 REVERSE
          Length = 394

 Score =  563 bits (1451), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 289/394 (73%), Positives = 317/394 (80%), Gaps = 2/394 (0%)

Query: 1   MSWRYKAGLFLISAVVIIWVTSAEVTQGIFTDYKQPFAVTYLGASLMVVYLPIAFLKDWI 60
           M WRYKAGLFLI  VVIIWVTSAEVTQ IFT YKQPFAVTYLGASLM+VYLP+AFLKDW+
Sbjct: 1   MGWRYKAGLFLIGTVVIIWVTSAEVTQDIFTAYKQPFAVTYLGASLMIVYLPVAFLKDWL 60

Query: 61  CKMIXXXXXXXXXXXXXLNESSDGLNSPLSRKIFEMELQGTLSKKGSEADLSSQA--EAK 118
           C+ +              ++SS  L SPL  KI EM LQGT++KK SE  LSS    + +
Sbjct: 61  CRYLDRRSSKSNKIPALTDDSSVELGSPLRHKIIEMGLQGTITKKDSEEHLSSHEEEDER 120

Query: 119 PLVPRXXXXXXXXXXXXELTAREIATYGFYIAPIWFVTEYLSNAALARXXXXXXXXXXXX 178
           PL+ +            E+T ++IA YG Y+APIWFVTEYLSNAALAR            
Sbjct: 121 PLIGKVREEVQTLKQRKEITTKQIAMYGLYLAPIWFVTEYLSNAALARTSVASTTVLSST 180

Query: 179 XXXXXXXIGVFLGQDTLNAAKVVAVFVSMAGVAMTTLGKTWAADDSQLSASINGKRSLVG 238
                  IGVFLGQDTLN +KVVAVFVSMAGV MTTLGKTWA+D+SQL++S+NG+RSL+G
Sbjct: 181 SGLFTLFIGVFLGQDTLNLSKVVAVFVSMAGVVMTTLGKTWASDESQLNSSLNGERSLMG 240

Query: 239 DLFGLLSAMSYGLFTVLLKKFAGEEGERVDVQKLFGYIGLFTLVALWWLVWPLTALGIEP 298
           DLFGLLSA+SYGLFTVLLKKFAGEEGE VDVQKLFGYIGLFTLVALWWLVWPLTALGIEP
Sbjct: 241 DLFGLLSAVSYGLFTVLLKKFAGEEGEGVDVQKLFGYIGLFTLVALWWLVWPLTALGIEP 300

Query: 299 KFTIPHSAKVDEVVIANGFIGSVLSDYFWALCVVWTTPLVATLGMSLTIPLAMVADMMIH 358
           KFTIPHS KVDEVV+ANGFIGSVLSDYFWAL VVWTTPLVATLGMSLTIPLAMVADMMIH
Sbjct: 301 KFTIPHSVKVDEVVLANGFIGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMMIH 360

Query: 359 GRHYSAIYILGSAQVFAGFVIANLSDWFSKKLGL 392
           GRHYSAIYILGS QVFAGFVIAN+SD FSKKLGL
Sbjct: 361 GRHYSAIYILGSTQVFAGFVIANISDLFSKKLGL 394


>AT3G07080.1 | Symbols:  | membrane protein | chr3:2241360-2242934
           FORWARD
          Length = 438

 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 175/410 (42%), Gaps = 35/410 (8%)

Query: 3   WRYKAGLFLISAVVIIWVTSAEVTQGIFTDYKQPFAVTYLGASLMVVYLPI----AFLKD 58
           WR+  GL  + AV  IW+ ++ V Q +      PF +T++  SL VVYLP+     +L+D
Sbjct: 6   WRWVLGLIYLFAVATIWIAASFVVQSVVEAGVSPFLITFICNSLFVVYLPLFEIGRYLED 65

Query: 59  -------WICKMIXXXXXXXXXXXXXLNESSDGLNSPLSRKIFEMELQGTLSKKGS--EA 109
                  W  K               L +   G+ S  +     +  +  +S+ G+  E+
Sbjct: 66  AYGSLLFWRSKRSHLMELVESEKAVLLGKDVSGVKSDATESSGLVVREQEISEGGNGIES 125

Query: 110 DLSS-QAEAKPLVPRXXXXXXXXXXXXELTAR----EIATYGFYIAPIWFVTEYLSNAAL 164
            L + + E    V              +   R     +A     I P WF+ +   N +L
Sbjct: 126 GLENIELEIDASVNVSDGASGVSNKGLDEKGRWTRMRVAKVSLVICPFWFLAQLTFNVSL 185

Query: 165 ARXXXXXXXXXXXXXXXXXXXIG-VFLGQDTLNAAKVVAVFVSMAGVAMTTLGKTWAADD 223
                                +  +FLG+      K+ +V + M+G  + ++G      D
Sbjct: 186 KYTTVTSNTILSSASSLFTFLVSLIFLGEK-FTWLKLFSVLLCMSGTIIVSMG------D 238

Query: 224 SQLSASINGKRSLVGDLFGLLSAMSYGLFTVLLKKFAGEEGER---VDVQKLFGYIGLFT 280
           S+  ++   K  L+GD+  L+SA  Y ++  L++K   ++ ER   V + +  G++GLF 
Sbjct: 239 SESKSNAVAKNPLLGDILSLVSAALYAVYITLIRKKLPDDDERNGRVSMAQFLGFLGLFN 298

Query: 281 LVALWWLVWPLTALGIEPKFTIPH-SAKVDEVVIANGFIGSVLSDYFWALCVVWTTPLVA 339
               +  + P   L    +      + K   +V+  G + +VLSDY WA  V+ TT  VA
Sbjct: 299 F---FIFLPPALILNFTKRERFNALTLKQFGLVVGKGLLDNVLSDYLWAKAVLLTTTTVA 355

Query: 340 TLGMSLTIPLAMVADMMIHGRHYSAIYILGSAQVFAGFVIANL-SDWFSK 388
           T G+++ +PLA + D +  G   S    +G+A V  GF   N+ S+ F K
Sbjct: 356 TAGLTIQVPLAAIVDSL-SGNKPSFTDYIGAAAVMVGFAGINIPSEMFCK 404