Jatropha Genome Database

JcCA0141501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0141501.10 + phase: 2 /partial
         (103 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17830.1 | Symbols:  | peptidase M20/M25/M40 family protein |...   177   8e-46

>AT4G17830.1 | Symbols:  | peptidase M20/M25/M40 family protein |
           chr4:9915916-9918049 FORWARD
          Length = 440

 Score =  177 bits (450), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 82/103 (79%), Positives = 96/103 (93%)

Query: 1   IADVKNKLQEYVDDINENIEKLDTRGPVSKYILPDENLRGSLTLTFEEAMSGVACDLESR 60
           + +V  KLQEYVDDIN NIE+L+TRGPVSKY+LPDENLRG LTL+F+EA +GVAC+L+S 
Sbjct: 303 VKEVITKLQEYVDDINGNIERLETRGPVSKYVLPDENLRGRLTLSFDEASAGVACNLDSP 362

Query: 61  GFHVLCKATEKVVGHVKPYSITGSLPLIRELQDEGFDVQTAGY 103
           GFHVLCKATE+VVGHVKPYSITG+LPLIR+LQDEGFDVQT+GY
Sbjct: 363 GFHVLCKATEEVVGHVKPYSITGTLPLIRDLQDEGFDVQTSGY 405