Jatropha Genome Database

JcCA0141021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0141021.10 - phase: 0 
         (135 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21170.1 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE); ca...    92   1e-19
AT2G21170.2 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE); ca...    62   2e-10
AT3G55440.1 | Symbols: ATCTIMC, TPI | TPI (TRIOSEPHOSPHATE ISOME...    49   9e-07

>AT2G21170.1 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE);
           catalytic/ triose-phosphate isomerase |
           chr2:9071047-9073106 REVERSE
          Length = 315

 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/105 (56%), Positives = 66/105 (62%), Gaps = 12/105 (11%)

Query: 3   MLSTSLAGPKSSYCAAPQFSGLRRSCPKLESTNSHSLSQSFLRHFNSQLRVPSSRKPSGH 62
           M +TSL  P       P FSGLRR  PKL++    S  QSF    NS  R+ SS   S  
Sbjct: 1   MAATSLTAP-------PSFSGLRRISPKLDAAAVSS-HQSFFHRVNSSTRLVSSSSSSHR 52

Query: 63  ----VVAMAGTGTFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 103
               VVAMAG+G FFVGGNWKCNGTK+SI KL+SDLN A LEADV
Sbjct: 53  SPRGVVAMAGSGKFFVGGNWKCNGTKDSIAKLISDLNSATLEADV 97


>AT2G21170.2 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE);
           catalytic/ triose-phosphate isomerase |
           chr2:9071047-9073106 REVERSE
          Length = 306

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/107 (47%), Positives = 59/107 (55%), Gaps = 25/107 (23%)

Query: 3   MLSTSLAGPKSSYCAAPQFSGLRRSCPKLES--TNSHSLSQSFLRHFNSQLRVPSSRKPS 60
           M +TSL  P       P FSGLRR  PKL++   +SH   QSF    NS  R+ SS   S
Sbjct: 1   MAATSLTAP-------PSFSGLRRISPKLDAAAVSSH---QSFFHRVNSSTRLVSSSSSS 50

Query: 61  GH----VVAMAGTGTFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 103
                 VVAMAG+G          NGTK+SI KL+SDLN A LEADV
Sbjct: 51  HRSPRGVVAMAGSGK---------NGTKDSIAKLISDLNSATLEADV 88


>AT3G55440.1 | Symbols: ATCTIMC, TPI | TPI (TRIOSEPHOSPHATE
           ISOMERASE); triose-phosphate isomerase |
           chr3:20553794-20556078 FORWARD
          Length = 254

 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 6/46 (13%)

Query: 72  FFVGGNWKCNGTKESITKLVSDLNDAKLEA-DVGERI-----FFLP 111
           FFVGGNWKCNGT E + K+V+ LN+A++ + DV E +      FLP
Sbjct: 5   FFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLP 50