Jatropha Genome Database

JcCA0140901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0140901.10 + phase: 0 /pseudo/partial
         (99 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44680.1 | Symbols: CKB4 | CKB4 (CASEIN KINASE II BETA SUBUNI...    72   5e-14
AT2G44680.2 | Symbols: CKB4 | CKB4 (CASEIN KINASE II BETA SUBUNI...    72   5e-14
AT5G47080.1 | Symbols: CKB1 | CKB1; protein kinase regulator | c...    49   6e-07
AT5G47080.3 | Symbols: CKB1 | CKB1; protein kinase regulator | c...    49   7e-07
AT5G47080.2 | Symbols: CKB1 | CKB1; protein kinase regulator | c...    49   8e-07

>AT2G44680.1 | Symbols: CKB4 | CKB4 (CASEIN KINASE II BETA SUBUNIT
          4); protein serine/threonine kinase |
          chr2:18426898-18428166 REVERSE
          Length = 283

 Score = 72.4 bits (176), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/63 (65%), Positives = 47/63 (74%), Gaps = 2/63 (3%)

Query: 17 IERKRINDALDKHLEKSSPSTSRALNNKDKDRLSVPSTSAGKSQLDHRDPRSASLSKNKC 76
          I+RKRINDALDKHL+KSSPSTSR   +KDKD  SVPSTS  KSQL  R P   S + ++ 
Sbjct: 26 IDRKRINDALDKHLKKSSPSTSRVFTSKDKD--SVPSTSTAKSQLHSRSPDVESDTDSEG 83

Query: 77 SDV 79
          SDV
Sbjct: 84 SDV 86


>AT2G44680.2 | Symbols: CKB4 | CKB4 (CASEIN KINASE II BETA SUBUNIT
          4); protein serine/threonine kinase |
          chr2:18426898-18428166 REVERSE
          Length = 282

 Score = 72.4 bits (176), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/63 (65%), Positives = 47/63 (74%), Gaps = 2/63 (3%)

Query: 17 IERKRINDALDKHLEKSSPSTSRALNNKDKDRLSVPSTSAGKSQLDHRDPRSASLSKNKC 76
          I+RKRINDALDKHL+KSSPSTSR   +KDKD  SVPSTS  KSQL  R P   S + ++ 
Sbjct: 26 IDRKRINDALDKHLKKSSPSTSRVFTSKDKD--SVPSTSTAKSQLHSRSPDVESDTDSEG 83

Query: 77 SDV 79
          SDV
Sbjct: 84 SDV 86


>AT5G47080.1 | Symbols: CKB1 | CKB1; protein kinase regulator |
          chr5:19124969-19126397 REVERSE
          Length = 287

 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 10/64 (15%)

Query: 17 IERKRINDALDKHLEKSSPSTSRALNNKDKDRLSVPSTSA---GKSQ---LDHRDPRSAS 70
          ++RKRINDAL    E+ SPSTSR +N K K  ++  +T+A   GK Q   ++HRD RSAS
Sbjct: 15 VDRKRINDAL----ERPSPSTSRQVNGKGKGTVTAATTTANLIGKQQSNNINHRDSRSAS 70

Query: 71 LSKN 74
          LSKN
Sbjct: 71 LSKN 74


>AT5G47080.3 | Symbols: CKB1 | CKB1; protein kinase regulator |
          chr5:19125231-19126397 REVERSE
          Length = 253

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 10/64 (15%)

Query: 17 IERKRINDALDKHLEKSSPSTSRALNNKDKDRLSVPSTSA---GKSQ---LDHRDPRSAS 70
          ++RKRINDAL    E+ SPSTSR +N K K  ++  +T+A   GK Q   ++HRD RSAS
Sbjct: 15 VDRKRINDAL----ERPSPSTSRQVNGKGKGTVTAATTTANLIGKQQSNNINHRDSRSAS 70

Query: 71 LSKN 74
          LSKN
Sbjct: 71 LSKN 74


>AT5G47080.2 | Symbols: CKB1 | CKB1; protein kinase regulator |
          chr5:19125231-19126397 REVERSE
          Length = 256

 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 10/64 (15%)

Query: 17 IERKRINDALDKHLEKSSPSTSRALNNKDKDRLSVPSTSA---GKSQ---LDHRDPRSAS 70
          ++RKRINDAL    E+ SPSTSR +N K K  ++  +T+A   GK Q   ++HRD RSAS
Sbjct: 15 VDRKRINDAL----ERPSPSTSRQVNGKGKGTVTAATTTANLIGKQQSNNINHRDSRSAS 70

Query: 71 LSKN 74
          LSKN
Sbjct: 71 LSKN 74