Jatropha Genome Database
- JcCA0140011.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0140011.10 + phase: 1 /pseudo/partial
(213 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23930.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 135 2e-32
AT4G23930.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 108 2e-24
AT1G64450.1 | Symbols: | proline-rich family protein | chr1:239... 98 4e-21
AT2G46150.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 49 2e-06
AT3G54200.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 49 3e-06
>AT4G23930.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 11 plant structures;
EXPRESSED DURING: 6 growth stages; CONTAINS InterPro
DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST
Arabidopsis thaliana protein match is: proline-rich
family protein (TAIR:AT1G64450.1); Has 183 Blast hits to
177 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 183; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). |
chr4:12436131-12436694 REVERSE
Length = 187
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 93/138 (67%), Gaps = 13/138 (9%)
Query: 76 QYVSVKNPNKASFSHYDSTLQLLYSGSQVGFMFIPAGKIDAGRTQYMAATFAVQSFPLSS 135
Q+ +V+NPN+A+FSHY++ +QL Y G+++G+ F+PAG+I++GRT+ M ATF+VQSFPL++
Sbjct: 63 QFSAVRNPNRAAFSHYNNVIQLFYYGNRIGYTFVPAGEIESGRTKRMLATFSVQSFPLAA 122
Query: 136 SPDAAVNVGPTFAGGVLPGGYPSVNGGYRVGPTMEIESRIHMAGRVRVLHIFTHHVEAKA 195
+ + R G T+EIES++ MAGRVRVL +FTH + AK
Sbjct: 123 ASSSQ-------------ISAAQFQNSDRSGSTVEIESKLEMAGRVRVLGLFTHRIAAKC 169
Query: 196 GCRVAIAVSDGSVLGFHC 213
CR+AI+ SDGS++ C
Sbjct: 170 NCRIAISSSDGSIVAVRC 187
>AT4G23930.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 11 plant structures;
EXPRESSED DURING: 6 growth stages; CONTAINS InterPro
DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST
Arabidopsis thaliana protein match is: proline-rich
family protein (TAIR:AT1G64450.1); Has 80 Blast hits to
75 proteins in 8 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). |
chr4:12436131-12436694 REVERSE
Length = 160
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 85/141 (60%), Gaps = 18/141 (12%)
Query: 73 PSPQYVSVKNPNKASFSHYDSTLQLLYSGSQVGFMFIPAGKIDAGRTQYMAATFAVQSFP 132
P SVK P SFS +S+L Y G+++G+ F+PAG+I++GRT+ M ATF+VQSFP
Sbjct: 38 PEISVTSVKVP---SFSVANSSL--FYYGNRIGYTFVPAGEIESGRTKRMLATFSVQSFP 92
Query: 133 LSSSPDAAVNVGPTFAGGVLPGGYPSVNGGYRVGPTMEIESRIHMAGRVRVLHIFTHHVE 192
L+++ + R G T+EIES++ MAGRVRVL +FTH +
Sbjct: 93 LAAASSSQ-------------ISAAQFQNSDRSGSTVEIESKLEMAGRVRVLGLFTHRIA 139
Query: 193 AKAGCRVAIAVSDGSVLGFHC 213
AK CR+AI+ SDGS++ C
Sbjct: 140 AKCNCRIAISSSDGSIVAVRC 160
>AT1G64450.1 | Symbols: | proline-rich family protein |
chr1:23941758-23942786 REVERSE
Length = 342
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 43/54 (79%), Positives = 50/54 (92%)
Query: 76 QYVSVKNPNKASFSHYDSTLQLLYSGSQVGFMFIPAGKIDAGRTQYMAATFAVQ 129
QYV+V+NPN+A FSHYDS++QLLYSG+QVGFMFIPAGKID+GR QYMAATF V
Sbjct: 71 QYVAVRNPNRAVFSHYDSSIQLLYSGNQVGFMFIPAGKIDSGRIQYMAATFTVH 124
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 47/52 (90%)
Query: 162 GYRVGPTMEIESRIHMAGRVRVLHIFTHHVEAKAGCRVAIAVSDGSVLGFHC 213
G RVGPTMEIES++ +AGRV+VLH+FTHHV AK+ CRV ++++DGSVLGFHC
Sbjct: 291 GNRVGPTMEIESKMELAGRVKVLHVFTHHVVAKSDCRVTVSIADGSVLGFHC 342
>AT2G46150.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
plasma membrane; EXPRESSED IN: 15 plant structures;
EXPRESSED DURING: 7 growth stages; CONTAINS InterPro
DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G54200.1); Has 137 Blast hits to 136 proteins
in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 4; Plants - 133; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:18961424-18962089 FORWARD
Length = 221
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 20/136 (14%)
Query: 78 VSVKNPNKASFSHYDSTLQLLYSGSQVGFMFIPAGKIDAGRTQYMAATFAVQSFPLSSSP 137
VSVKNPN ASF + ++T + Y G+ VG GK RT M T + + S P
Sbjct: 100 VSVKNPNTASFKYSNTTTDIYYKGTLVGEAHGLPGKARPHRTSRMNVTVDIMLDRILSDP 159
Query: 138 DAAVNVGPTFAGGVLPGGYPSVNGGYRVGPTMEIESRIHMAGRVRVLHIFTHHVEAKAGC 197
+ + G +V RVG G+V+++ I HV K C
Sbjct: 160 GLGREISRS--------GLVNVWSYTRVG------------GKVKIMGIVKKHVTVKMNC 199
Query: 198 RVAIAVSDGSVLGFHC 213
+A+ ++ ++ C
Sbjct: 200 TMAVNITGQAIQDVDC 215
>AT3G54200.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
anchored to plasma membrane, plasma membrane; EXPRESSED
IN: 23 plant structures; EXPRESSED DURING: 14 growth
stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1
(InterPro:IPR010847); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G05975.1); Has 405
Blast hits to 404 proteins in 16 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 405;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr3:20065731-20066438 FORWARD
Length = 235
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 21/136 (15%)
Query: 78 VSVKNPNKASFSHYDSTLQLLYSGSQVGFMFIPAGKIDAGRTQYMAATFAVQSFPLSSSP 137
+S+KNPN+ FS+ S+ L Y G +G +PA +I A +T + T + + L S
Sbjct: 115 LSLKNPNRIGFSYDSSSALLNYRGQVIGEAPLPANRIAARKTVPLNITLTLMADRLLSET 174
Query: 138 DAAVNVGPTFAGGVLPGGYPSVNGGYRVGPTMEIESRIHMAGRVRVLHIFTHHVEAKAGC 197
+V GV+P + + + + G+V VL IF V++ + C
Sbjct: 175 QLLSDV----MAGVIP-----------------LNTFVKVTGKVTVLKIFKIKVQSSSSC 213
Query: 198 RVAIAVSDGSVLGFHC 213
++I+VSD +V HC
Sbjct: 214 DLSISVSDRNVTSQHC 229