Jatropha Genome Database
- JcCA0140001.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0140001.20 - phase: 1 /partial
(116 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | LHB1B1; chlorophyll bin... 215 3e-57
AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | LHB1B2; chlorophyll bin... 215 5e-57
AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | CAB1 (CHLO... 215 6e-57
AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | CAB2 (CHLOROPHYLL ... 214 6e-57
AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | CAB3 (CHLOROPHYLL ... 214 6e-57
AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | LHCB2.3; chloro... 211 6e-56
AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | LHCB2.2; chlorophyll bin... 208 6e-55
AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | LHCB2.1; chlorophyll bin... 206 2e-54
AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | LHCB3 (LIGHT-HARVESTING ... 166 2e-42
AT4G10340.1 | Symbols: LHCB5 | LHCB5 (LIGHT HARVESTING COMPLEX O... 110 2e-25
AT1G76570.1 | Symbols: | chlorophyll A-B binding family protein... 104 9e-24
AT1G61520.1 | Symbols: LHCA3 | LHCA3; chlorophyll binding | chr1... 94 2e-20
AT1G61520.2 | Symbols: LHCA3 | LHCA3; chlorophyll binding | chr1... 93 3e-20
AT3G54890.1 | Symbols: LHCA1 | LHCA1; chlorophyll binding | chr3... 88 1e-18
AT5G01530.1 | Symbols: | chlorophyll A-B binding protein CP29 (... 84 2e-17
AT3G08940.2 | Symbols: LHCB4.2 | LHCB4.2 (light harvesting compl... 80 2e-16
AT1G45474.2 | Symbols: LHCA5 | LHCA5; pigment binding | chr1:171... 78 9e-16
AT1G45474.1 | Symbols: LHCA5 | LHCA5; pigment binding | chr1:171... 78 9e-16
AT3G61470.1 | Symbols: LHCA2 | LHCA2; chlorophyll binding | chr3... 73 3e-14
AT3G47470.1 | Symbols: LHCA4, CAB4 | LHCA4 (LIGHT-HARVESTING CHL... 73 4e-14
AT5G28450.1 | Symbols: | chlorophyll A-B binding protein, chlor... 70 2e-13
AT2G40100.1 | Symbols: LHCB4.3 | LHCB4.3 (light harvesting compl... 67 2e-12
AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | LHCA6; chlorophyll bindi... 64 2e-11
AT3G54890.2 | Symbols: LHCA1 | LHCA1; chlorophyll binding | chr3... 63 4e-11
AT3G54890.4 | Symbols: LHCA1 | LHCA1; chlorophyll binding | chr3... 50 3e-07
>AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | LHB1B1; chlorophyll
binding | chr2:14524818-14525618 FORWARD
Length = 266
Score = 215 bits (548), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 106/117 (90%), Positives = 111/117 (94%), Gaps = 1/117 (0%)
Query: 1 SLIHAQSILAIWACQVVLMGAVEGYRVAG-GPLGEVTDPIYPGGSFDPLGLADDPEAFAE 59
SL+HAQSILAIWA QV+LMGAVEGYRVAG GPLGE D +YPGGSFDPLGLA DPEAFAE
Sbjct: 150 SLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAE 209
Query: 60 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 116
LKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 210 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
>AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | LHB1B2; chlorophyll
binding | chr2:14522716-14523513 REVERSE
Length = 265
Score = 215 bits (547), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 106/117 (90%), Positives = 111/117 (94%), Gaps = 1/117 (0%)
Query: 1 SLIHAQSILAIWACQVVLMGAVEGYRVAG-GPLGEVTDPIYPGGSFDPLGLADDPEAFAE 59
SL+HAQSILAIWA QV+LMGAVEGYRVAG GPLGE D +YPGGSFDPLGLA DPEAFAE
Sbjct: 149 SLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAE 208
Query: 60 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 116
LKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
>AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | CAB1
(CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding
| chr1:10478071-10478874 FORWARD
Length = 267
Score = 215 bits (547), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 105/117 (89%), Positives = 111/117 (94%), Gaps = 1/117 (0%)
Query: 1 SLIHAQSILAIWACQVVLMGAVEGYRVAG-GPLGEVTDPIYPGGSFDPLGLADDPEAFAE 59
SL+HAQSILAIWA QV+LMGAVEGYRVAG GPLGE D +YPGGSFDPLGLA DPEAFAE
Sbjct: 151 SLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAE 210
Query: 60 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 116
LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 211 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267
>AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | CAB2 (CHLOROPHYLL
A/B-BINDING PROTEIN 2); chlorophyll binding |
chr1:10475089-10475892 REVERSE
Length = 267
Score = 214 bits (546), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 105/117 (89%), Positives = 111/117 (94%), Gaps = 1/117 (0%)
Query: 1 SLIHAQSILAIWACQVVLMGAVEGYRVAG-GPLGEVTDPIYPGGSFDPLGLADDPEAFAE 59
SL+HAQSILAIWA QV+LMGAVEGYRVAG GPLGE D +YPGGSFDPLGLA DPEAFAE
Sbjct: 151 SLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAE 210
Query: 60 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 116
LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 211 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267
>AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | CAB3 (CHLOROPHYLL A/B
BINDING PROTEIN 3); chlorophyll binding |
chr1:10472443-10473246 REVERSE
Length = 267
Score = 214 bits (546), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 105/117 (89%), Positives = 111/117 (94%), Gaps = 1/117 (0%)
Query: 1 SLIHAQSILAIWACQVVLMGAVEGYRVAG-GPLGEVTDPIYPGGSFDPLGLADDPEAFAE 59
SL+HAQSILAIWA QV+LMGAVEGYRVAG GPLGE D +YPGGSFDPLGLA DPEAFAE
Sbjct: 151 SLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAE 210
Query: 60 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 116
LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 211 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267
>AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | LHCB2.3;
chlorophyll binding | chr3:10256002-10256921 FORWARD
Length = 266
Score = 211 bits (538), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 99/116 (85%), Positives = 109/116 (93%)
Query: 1 SLIHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAEL 60
+LIHAQSILAIWACQVVLMG +EGYR+ GGPLGE DP+YPGG+FDPL LA+DPEAF+EL
Sbjct: 151 NLIHAQSILAIWACQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSEL 210
Query: 61 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 116
KVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 211 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANNAWAYATNFVPGK 266
>AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | LHCB2.2; chlorophyll
binding | chr2:1799436-1800329 REVERSE
Length = 265
Score = 208 bits (529), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 98/116 (84%), Positives = 108/116 (93%)
Query: 1 SLIHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAEL 60
+LIHAQSILAIWA QVVLMG +EGYR+ GGPLGE DP+YPGG+FDPL LA+DPEAF+EL
Sbjct: 150 NLIHAQSILAIWAVQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSEL 209
Query: 61 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 116
KVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAW+YATNFVPGK
Sbjct: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWSYATNFVPGK 265
>AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | LHCB2.1; chlorophyll
binding | chr2:1823449-1824331 REVERSE
Length = 265
Score = 206 bits (524), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/115 (84%), Positives = 107/115 (93%)
Query: 1 SLIHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAEL 60
+LIHAQSILAIWA QVVLMG +EGYR+ GGPLGE DP+YPGG+FDPL LA+DPEAF+EL
Sbjct: 150 NLIHAQSILAIWAVQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSEL 209
Query: 61 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 115
KVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAW+YATNFVPG
Sbjct: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWSYATNFVPG 264
>AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | LHCB3 (LIGHT-HARVESTING
CHLOROPHYLL B-BINDING PROTEIN 3); structural molecule |
chr5:22038424-22039383 FORWARD
Length = 265
Score = 166 bits (421), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/117 (74%), Positives = 97/117 (82%), Gaps = 3/117 (2%)
Query: 1 SLIHAQSILAIWACQVVLMGAVEGYRVAG-GPLGEVTDPIYPGGS-FDPLGLADDPEAFA 58
+L+HAQSILA+ QV+LMG VEG+R+ G +GE D +YPGG FDPLGLADDP FA
Sbjct: 149 NLVHAQSILAVLGFQVILMGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFA 207
Query: 59 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 115
ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAWA+AT F PG
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWAFATKFAPG 264
>AT4G10340.1 | Symbols: LHCB5 | LHCB5 (LIGHT HARVESTING COMPLEX OF
PHOTOSYSTEM II 5); chlorophyll binding |
chr4:6408200-6409496 FORWARD
Length = 280
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 20 GAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 79
G E YR+ G + D ++PGG FDPLGLA DPE A LKVKEIKNGRLAMF+M GFF
Sbjct: 183 GGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFF 240
Query: 80 VQAIVTGKGPLENLADHLADPVNNN 104
+QA VTG+GP+ENLA HL+DP NN
Sbjct: 241 IQAYVTGEGPVENLAKHLSDPFGNN 265
>AT1G76570.1 | Symbols: | chlorophyll A-B binding family protein |
chr1:28729132-28730754 FORWARD
Length = 327
Score = 104 bits (260), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 73/107 (68%), Gaps = 7/107 (6%)
Query: 5 AQSILAIWACQVVLMGAVEGYRVAG----GPLGEVT--DPIYPGGS-FDPLGLADDPEAF 57
+Q ++ I CQV+LM E R G PLG D YPGG+ FDPL L++DP AF
Sbjct: 214 SQGVIVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAF 273
Query: 58 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 104
+LKVKEIKNGRLAM + GF+ QA TGKGP++NL DH++DP++NN
Sbjct: 274 EDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNN 320
>AT1G61520.1 | Symbols: LHCA3 | LHCA3; chlorophyll binding |
chr1:22700152-22701149 FORWARD
Length = 273
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 37 DPIYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 95
+P YPGG F +PLG D ++ ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL D
Sbjct: 197 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLD 256
Query: 96 HLADPVNNN 104
HLADPVNNN
Sbjct: 257 HLADPVNNN 265
>AT1G61520.2 | Symbols: LHCA3 | LHCA3; chlorophyll binding |
chr1:22700493-22701149 FORWARD
Length = 218
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 37 DPIYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 95
+P YPGG F +PLG D ++ ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL D
Sbjct: 142 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLD 201
Query: 96 HLADPVNNN 104
HLADPVNNN
Sbjct: 202 HLADPVNNN 210
>AT3G54890.1 | Symbols: LHCA1 | LHCA1; chlorophyll binding |
chr3:20339706-20340922 REVERSE
Length = 241
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 40 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLA 98
YPGG+FDPLG + DP+ ELKVKEIKNGRLA+ + GF V Q+ G GPLENLA HLA
Sbjct: 167 YPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 226
Query: 99 DPVNNN 104
DP +NN
Sbjct: 227 DPWHNN 232
>AT5G01530.1 | Symbols: | chlorophyll A-B binding protein CP29
(LHCB4) | chr5:209084-210243 FORWARD
Length = 290
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 62/95 (65%), Gaps = 5/95 (5%)
Query: 11 IWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSF-DPLGLADDPEAFAELKVKEIKNGR 69
IW +V+++G +E R A + +YPGG F DPLGLA DPE A+L++ EIK+ R
Sbjct: 192 IW-IEVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHAR 247
Query: 70 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 104
LAM + GF VQA TGKGPL N A HL+DP++
Sbjct: 248 LAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTT 282
>AT3G08940.2 | Symbols: LHCB4.2 | LHCB4.2 (light harvesting complex
PSII); chlorophyll binding | chr3:2717717-2718665
FORWARD
Length = 287
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 5/95 (5%)
Query: 11 IWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSF-DPLGLADDPEAFAELKVKEIKNGR 69
IW +V+++G +E R A + +YPGG F DPLGLA DP A+L++ EIK+ R
Sbjct: 189 IW-IEVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHAR 244
Query: 70 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 104
LAM GF VQA TGKGPL N A HL+DP++
Sbjct: 245 LAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTT 279
>AT1G45474.2 | Symbols: LHCA5 | LHCA5; pigment binding |
chr1:17179353-17180439 FORWARD
Length = 256
Score = 78.2 bits (191), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 34 EVTDPIYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 92
E +P YPGG +PLGLA D + + K+KEIKNGRLAM +M GFFVQA VT GP++N
Sbjct: 175 EGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDN 234
Query: 93 LADHLADP 100
L +HL++P
Sbjct: 235 LVEHLSNP 242
>AT1G45474.1 | Symbols: LHCA5 | LHCA5; pigment binding |
chr1:17179353-17180439 FORWARD
Length = 256
Score = 78.2 bits (191), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 34 EVTDPIYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 92
E +P YPGG +PLGLA D + + K+KEIKNGRLAM +M GFFVQA VT GP++N
Sbjct: 175 EGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDN 234
Query: 93 LADHLADP 100
L +HL++P
Sbjct: 235 LVEHLSNP 242
>AT3G61470.1 | Symbols: LHCA2 | LHCA2; chlorophyll binding |
chr3:22745736-22747032 FORWARD
Length = 257
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 59/107 (55%), Gaps = 16/107 (14%)
Query: 10 AIWACQVVLMGAVEGYRVAG--GPLGEVTDPI------------YPGG-SFDPLGLAD-D 53
++ +++L+G EG R A P TDP+ YPGG FDPLG
Sbjct: 139 TLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGS 198
Query: 54 PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 100
P EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 199 PAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 245
>AT3G47470.1 | Symbols: LHCA4, CAB4 | LHCA4 (LIGHT-HARVESTING
CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4); chlorophyll
binding | chr3:17493622-17494773 REVERSE
Length = 251
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Query: 31 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 90
P GEV YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP
Sbjct: 179 PKGEVG---YPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPF 231
Query: 91 ENLADHLADPVNNN 104
ENL HL+DP +N
Sbjct: 232 ENLLQHLSDPWHNT 245
>AT5G28450.1 | Symbols: | chlorophyll A-B binding protein,
chloroplast, putative / LHCI type II CAB, putative |
chr5:10372978-10374190 REVERSE
Length = 173
Score = 70.1 bits (170), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 36 TDPIYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 93
TD YPGG FDPLG P EL+ KEIKNGRLAM ++ G + Q I TG GP++NL
Sbjct: 95 TDIGYPGGLWFDPLGWGSGSPTKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL 154
Query: 94 ADHLADP 100
HLADP
Sbjct: 155 FAHLADP 161
>AT2G40100.1 | Symbols: LHCB4.3 | LHCB4.3 (light harvesting complex
PSII); chlorophyll binding | chr2:16745884-16747190
FORWARD
Length = 276
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 52/87 (59%), Gaps = 10/87 (11%)
Query: 11 IWACQVVLMGAVEGYRVAGGPLGEVTDP---IYPGGSFDPLGLADDPEAFAELKVKEIKN 67
IW +V+++G +E R DP IYPGG FDPLGLA DPE LK+ EIK+
Sbjct: 193 IW-IEVLVVGYIEFQR------NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKH 245
Query: 68 GRLAMFSMFGFFVQAIVTGKGPLENLA 94
RLAM + F +QA TGKGP+ LA
Sbjct: 246 SRLAMVAFLIFALQAAFTGKGPVSFLA 272
>AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | LHCA6; chlorophyll binding
| chr1:6612806-6613799 FORWARD
Length = 270
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 10 AIWACQVVLMGAVEGYRVAG--GPLGEVTDPIYP-------------GGSFDPLGLAD-D 53
++ Q+VLMG EG R A P +P YP G FD +
Sbjct: 152 TLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGS 211
Query: 54 PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATN 111
PE L+ KEIKNGRLAM + GF QA T + P+ENL HLADP + N ++ T+
Sbjct: 212 PEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTS 269
>AT3G54890.2 | Symbols: LHCA1 | LHCA1; chlorophyll binding |
chr3:20339706-20340922 REVERSE
Length = 207
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 59 ELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 104
ELKVKEIKNGRLA+ + GF V Q+ G GPLENLA HLADP +NN
Sbjct: 152 ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 198
>AT3G54890.4 | Symbols: LHCA1 | LHCA1; chlorophyll binding |
chr3:20339881-20340922 REVERSE
Length = 213
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 25/30 (83%)
Query: 40 YPGGSFDPLGLADDPEAFAELKVKEIKNGR 69
YPGG+FDPLG + DP+ ELKVKEIKNG+
Sbjct: 167 YPGGAFDPLGYSKDPKKLEELKVKEIKNGK 196