Jatropha Genome Database

JcCA0140001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0140001.10 + phase: 0 /partial
         (268 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G18240.1 | Symbols: ATSS4, SSIV, SS4 | ATSS4; transferase, tr...   443   e-125
AT1G11720.1 | Symbols: ATSS3 | ATSS3 (starch synthase 3); starch...   236   2e-62
AT3G01180.1 | Symbols: AtSS2 | AtSS2 (starch synthase 2); transf...   149   2e-36
AT5G24300.1 | Symbols: SSI1, SSI, ATSS1 | SSI1 (SUPPRESSOR OF SA...   148   4e-36
AT1G32900.1 | Symbols:  | starch synthase, putative | chr1:11920...   130   1e-30

>AT4G18240.1 | Symbols: ATSS4, SSIV, SS4 | ATSS4; transferase,
            transferring glycosyl groups | chr4:10082221-10087044
            FORWARD
          Length = 1040

 Score =  443 bits (1140), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 201/257 (78%), Positives = 231/257 (89%)

Query: 1    GGRGLHSTLNFHAKKFIGILNGIDTDSWNPMTDSFLKVQYSSNDLQGKTENKLAIRRHLG 60
            GG+GLHSTLNFH+KKFIGILNGIDTDSWNP TD FLK Q+++ DLQGK ENK A+R+ LG
Sbjct: 774  GGKGLHSTLNFHSKKFIGILNGIDTDSWNPATDPFLKAQFNAKDLQGKEENKHALRKQLG 833

Query: 61   LSTADAKRPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVAHIQREFEGIAN 120
            LS+A+++RPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPV HIQREFEGI  
Sbjct: 834  LSSAESRRPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVPHIQREFEGIEQ 893

Query: 121  HFQNHEHIRLILKYDDSLAHSIYAASDMFIIPSIFEPCGLTQMIAMRYGSIPIARKTGGL 180
             F++H+H+RL+LKYD++L+H+IYAASD+FIIPSIFEPCGLTQMIAMRYGSIPIARKTGGL
Sbjct: 894  QFKSHDHVRLLLKYDEALSHTIYAASDLFIIPSIFEPCGLTQMIAMRYGSIPIARKTGGL 953

Query: 181  NDSVFDVDDDAIPLQFRNGFTFLTPDEQGINGALERAFNYYRNNPEGWQELVQKDMNIDF 240
            NDSVFD+DDD IP QF+NGFTF T DEQG N ALERAFN+Y+ + E W  LV+K M+IDF
Sbjct: 954  NDSVFDIDDDTIPTQFQNGFTFQTADEQGFNYALERAFNHYKKDEEKWMRLVEKVMSIDF 1013

Query: 241  SWESSASQYEDLYANSV 257
            SW SSA+QYE+LY  SV
Sbjct: 1014 SWGSSATQYEELYTRSV 1030


>AT1G11720.1 | Symbols: ATSS3 | ATSS3 (starch synthase 3); starch
            synthase/ transferase, transferring glycosyl groups |
            chr1:3952511-3956840 FORWARD
          Length = 1025

 Score =  236 bits (601), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 124/255 (48%), Positives = 169/255 (66%), Gaps = 9/255 (3%)

Query: 6    HSTLNFHAKKFIGILNGIDTDSWNPMTDSFLKVQYSS-NDLQGKTENKLAIRRHLGLSTA 64
            +S ++ H  KF GI+NGID D W+P  D+F+ V Y+S N ++GK   K  ++  LGL +A
Sbjct: 768  NSVISAHLYKFHGIINGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEELQNRLGLKSA 827

Query: 65   DAKRPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVAHIQREFEGIAN--HF 122
            D   P+VG ITRL  QKG+HLI+HAI+RTLE  GQ VLLGS+P   IQ +F  +AN  H 
Sbjct: 828  DF--PVVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHS 885

Query: 123  QNHEHIRLILKYDDSLAHSIYAASDMFIIPSIFEPCGLTQMIAMRYGSIPIARKTGGLND 182
             + +  RL+L YD+ L+H IYA +D  ++PSIFEPCGLTQ+IAMRYG++P+ RKTGGL D
Sbjct: 886  SHGDRARLVLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGAVPVVRKTGGLFD 945

Query: 183  SVFDVDDDAIPLQFR----NGFTFLTPDEQGINGALERAFNYYRNNPEGWQELVQKDMNI 238
            +VFDVD D    Q +    NGF+F   D  G++ AL RA + + +  E +  L +  M  
Sbjct: 946  TVFDVDHDKERAQAQVLEPNGFSFDGADAPGVDYALNRAISAWYDGREWFNSLCKTVMEQ 1005

Query: 239  DFSWESSASQYEDLY 253
            D+SW   A +Y +LY
Sbjct: 1006 DWSWNRPALEYLELY 1020


>AT3G01180.1 | Symbols: AtSS2 | AtSS2 (starch synthase 2);
           transferase, transferring glycosyl groups |
           chr3:62456-65678 REVERSE
          Length = 792

 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/259 (36%), Positives = 139/259 (53%), Gaps = 16/259 (6%)

Query: 1   GGRGLHSTLNFHAKKFIGILNGIDTDSWNPMTDSFLK----VQYSSNDLQ-GKTENKLAI 55
           GG GLH+ +N +  KF GI+NGIDT  WNP  D++L       YS  +L  GK + K A+
Sbjct: 535 GGWGLHNIINENDWKFRGIVNGIDTQEWNPEFDTYLHSDDYTNYSLENLHIGKPQCKAAL 594

Query: 56  RRHLGLSTADAKRPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGS--SPVAHIQR 113
           ++ LGL       PL+G I RL  QKGV LI  A+   +    Q V+LG+    +  + R
Sbjct: 595 QKELGLPVR-PDVPLIGFIGRLDHQKGVDLIAEAVPWMMSQDVQLVMLGTGRPDLEEVLR 653

Query: 114 EFEGIANHFQNHEHIRLILKYDDSLAHSIYAASDMFIIPSIFEPCGLTQMIAMRYGSIPI 173
           + E      Q  +  R  + +    AH I A +D+ ++PS FEPCGL Q+ AM YG+IP+
Sbjct: 654 QME-----HQYRDKARGWVGFSVKTAHRITAGADILLMPSRFEPCGLNQLYAMNYGTIPV 708

Query: 174 ARKTGGLNDSVFDVDDDAIPLQFRNGFTFLTPDEQGINGALERAFNYYRNNPEGWQELVQ 233
               GGL D+V   D  +   +   G+TF + +   +  AL      YR   E W+ L +
Sbjct: 709 VHAVGGLRDTVQQFDPYS---ETGLGWTFDSAEAGKLIHALGNCLLTYREYKESWEGLQR 765

Query: 234 KDMNIDFSWESSASQYEDL 252
           + M  D SW+++A +YE++
Sbjct: 766 RGMTQDLSWDNAAEKYEEV 784


>AT5G24300.1 | Symbols: SSI1, SSI, ATSS1 | SSI1 (SUPPRESSOR OF
           SALICYLIC ACID INSENSITIVITY 1); starch synthase/
           transferase, transferring glycosyl groups |
           chr5:8266934-8270860 FORWARD
          Length = 652

 Score =  148 bits (373), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/256 (34%), Positives = 137/256 (53%), Gaps = 9/256 (3%)

Query: 1   GGRGLHSTLNFHAKKFIGILNGIDTDSWNPMTDSFLKVQYSSNDLQGKTENKLAIRRHLG 60
           GG GL   L+       GI NGI+ D WNP TD  +   YS++D+  K + K+A+++ LG
Sbjct: 392 GGYGLQDLLSSRKSVINGITNGINVDEWNPSTDEHIPFHYSADDVSEKIKCKMALQKELG 451

Query: 61  LSTADAKRPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVAHIQREFEGIAN 120
           L     + P++G I RL  QKG+ LI+ A    +    QFV+LGS        ++E    
Sbjct: 452 LPIR-PECPMIGFIGRLDYQKGIDLIQTAGPDLMVDDIQFVMLGSG-----DPKYESWMR 505

Query: 121 HFQN--HEHIRLILKYDDSLAHSIYAASDMFIIPSIFEPCGLTQMIAMRYGSIPIARKTG 178
             +    +  R  + ++  ++H I A  D+ ++PS FEPCGL Q+ AMRYG+IP+   TG
Sbjct: 506 SMEETYRDKFRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVVHGTG 565

Query: 179 GLNDSVFDVDDDAIPLQFRNGFTFLTP-DEQGINGALERAFNYYRNNPEGWQELVQKDMN 237
           GL D+V + +  A            TP  +  +  AL  A   YR   + W+ L+++ M 
Sbjct: 566 GLRDTVENFNPYAEGGAGTGTGWVFTPLSKDSMVSALRLAAATYREYKQSWEGLMRRGMT 625

Query: 238 IDFSWESSASQYEDLY 253
            ++SWE++A QYE ++
Sbjct: 626 RNYSWENAAVQYEQVF 641


>AT1G32900.1 | Symbols:  | starch synthase, putative |
           chr1:11920582-11923506 REVERSE
          Length = 610

 Score =  130 bits (326), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 130/260 (50%), Gaps = 24/260 (9%)

Query: 3   RGLHSTLNFHAKKFIGILNGIDTDSWNPMTDSFLKVQYSSNDLQGKTENKLAIRRHLGLS 62
           RG+        K   GI+NG+D   WNP TD ++ ++Y   D+   T+ K  I+  L  +
Sbjct: 336 RGVELHKYLRMKTVSGIINGMDVQEWNPSTDKYIDIKY---DITTVTDAKPLIKEALQAA 392

Query: 63  T---ADAKRPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGS------SPVAHIQR 113
                D   P++G I RL  QKG  ++  AI + + L  Q V+LG+      + +  ++ 
Sbjct: 393 VGLPVDRDVPVIGFIGRLEEQKGSDILVEAISKFMGLNVQMVILGTGKKKMEAQILELEE 452

Query: 114 EFEGIANHFQNHEHIRLILKYDDSLAHSIYAASDMFIIPSIFEPCGLTQMIAMRYGSIPI 173
           +F G A           + K++  LAH I A +D  I+PS FEPCGL Q+ AMRYG++PI
Sbjct: 453 KFPGKAVG---------VAKFNVPLAHMITAGADFIIVPSRFEPCGLIQLHAMRYGTVPI 503

Query: 174 ARKTGGLNDSVFDVDDDAIPLQFRNGFTFLTPDEQ-GINGALERAFNYYRNNPEGWQELV 232
              TGGL D+V D        +F      + PD+      A+ RA   Y  +    QE+V
Sbjct: 504 VASTGGLVDTVKDGYTGFHIGRFNVKCEVVDPDDVIATAKAVTRAVAVYGTS--AMQEMV 561

Query: 233 QKDMNIDFSWESSASQYEDL 252
           +  M+ DFSW+  A  +E +
Sbjct: 562 KNCMDQDFSWKGPARLWEKV 581