Jatropha Genome Database

JcCA0139851.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0139851.20 + phase: 2 /TE/partial
         (889 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00300.1 | Symbols: ORF145A | hypothetical protein | chrM:896...    73   7e-13

>ATMG00300.1 | Symbols: ORF145A | hypothetical protein |
           chrM:89617-90054 REVERSE
          Length = 145

 Score = 73.2 bits (178), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 56/112 (50%), Gaps = 2/112 (1%)

Query: 279 GQWKLTKGSMVVANGRKDPKLYVMHAKLARDTLNVAED-DSAVELWHKRLGHMSEKGMTT 337
           G  K+ KG   +  G +   LY++   +     N+AE       LWH RL HMS++GM  
Sbjct: 27  GVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKDETRLWHSRLAHMSQRGMEL 86

Query: 338 LVKNNMLSGLDKVHLEKCSDCMARKQNRVAFKISQPSKMKNVLDLVHSDLCG 389
           LVK   L       L+ C DC+  K +RV F   Q +  KN LD VHSDL G
Sbjct: 87  LVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHT-TKNPLDYVHSDLWG 137