Jatropha Genome Database

JcCA0139851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0139851.10 + phase: 0 
         (188 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G13440.1 | Symbols:  | calcium-binding EF hand family protein...   124   2e-29
AT5G37770.1 | Symbols: TCH2, CML24 | TCH2 (TOUCH 2); calcium ion...    47   6e-06

>AT4G13440.1 | Symbols:  | calcium-binding EF hand family protein |
           chr4:7810215-7810679 FORWARD
          Length = 154

 Score =  124 bits (312), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 95/151 (62%), Gaps = 5/151 (3%)

Query: 1   MEEISETAKAYYANLSEKQKRLAKDFFNEMDKDGDGKITFDEYEQRIKPKKGFNPIASSD 60
           M+E+ E A AYY N S +Q+ L+  FF  MD +GDG+++  EY   ++   G   I   +
Sbjct: 1   MDELHEAAIAYYNNGSMEQQNLSWQFFRAMDVNGDGRVSLQEYTDFLRQTAGLAWI-HPE 59

Query: 61  FFRKLDKDGNGTLDFDEFVTLHYICATRRVFYCDECRVFLDRVYFTCVQCFNGS-GNTYD 119
            FR+LD++G+G LDF E +TL+Y+  TR +  C  C   L+ +YFTCV CF  S GNT+D
Sbjct: 60  MFRELDRNGDGQLDFWEVLTLYYVARTRTI-NCRTCLRILNGLYFTCVTCFESSCGNTFD 118

Query: 120 LCVSCYRDKNIINHHKDAVFLDNYTMLHAKR 150
           LCV CY  +   + H+  +FLD+Y +L ++R
Sbjct: 119 LCVKCYMRRTYCHPHR--LFLDSYVLLRSRR 147


>AT5G37770.1 | Symbols: TCH2, CML24 | TCH2 (TOUCH 2); calcium ion
          binding | chr5:14999075-14999560 REVERSE
          Length = 161

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 7/62 (11%)

Query: 24 KDFFNEMDKDGDGKITFDEYEQRIKPKKGFNPIASSD----FFRKLDKDGNGTLDFDEFV 79
          K  F   DK+GDGKI+ DE ++ I+     +P AS +      ++ D DGNG +D DEFV
Sbjct: 19 KKVFQRFDKNGDGKISVDELKEVIRA---LSPTASPEETVTMMKQFDLDGNGFIDLDEFV 75

Query: 80 TL 81
           L
Sbjct: 76 AL 77