Jatropha Genome Database

JcCA0139031.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0139031.10 - phase: 0 /partial
         (278 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17190.1 | Symbols: FPS2 | FPS2 (FARNESYL DIPHOSPHATE SYNTHAS...   414   e-116
AT5G47770.1 | Symbols: FPS1 | FPS1 (FARNESYL DIPHOSPHATE SYNTHAS...   406   e-114
AT4G17190.2 | Symbols: FPS2 | FPS2 (FARNESYL DIPHOSPHATE SYNTHAS...   277   4e-75

>AT4G17190.1 | Symbols: FPS2 | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE
           2); dimethylallyltranstransferase/
           geranyltranstransferase | chr4:9648743-9650865 REVERSE
          Length = 342

 Score =  414 bits (1064), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 192/276 (69%), Positives = 229/276 (82%)

Query: 1   MSDLKSKFLEVYSTLKSQLLNDPAFEFTDDSRQWLDRMLDYNVPRGKLYRGLAVIDCYKS 60
           M+DLKS FL+VYS LKS LL DP+FEFT +SRQWL+RMLDYNV  GKL RGL+V+D YK 
Sbjct: 1   MADLKSTFLDVYSVLKSDLLQDPSFEFTHESRQWLERMLDYNVRGGKLNRGLSVVDSYKL 60

Query: 61  LKEGKELTNDEMLLACVLGWCIEWLQACAVVLDDIMDNSHTRRGQPCWYMLPKVGFIAIN 120
           LK+G++LT  E  L+C LGWCIEWLQA  +VLDDIMDNS TRRGQPCW+  PKVG IAIN
Sbjct: 61  LKQGQDLTEKETFLSCALGWCIEWLQAYFLVLDDIMDNSVTRRGQPCWFRKPKVGMIAIN 120

Query: 121 DGIILPNQVRRILKMYFREKPYYVHLLELFHEVEFQSVCGEMIDLISTHKGEQDLSNYSL 180
           DGI+L N + RILK +FRE PYYV L++LF+EVEFQ+ CG+MIDLI+T  GE+DLS YSL
Sbjct: 121 DGILLRNHIHRILKKHFREMPYYVDLVDLFNEVEFQTACGQMIDLITTFDGEKDLSKYSL 180

Query: 181 SLYHRIVEYKSAYYSIYLPVACSLLMAGENLESHAEAKKILIEITIYFQVQDDYQDCFGD 240
            ++ RIVEYK+AYYS YLPVAC+LLMAGENLE+H + K +L+++ IYFQVQDDY DCF D
Sbjct: 181 QIHRRIVEYKTAYYSFYLPVACALLMAGENLENHTDVKTVLVDMGIYFQVQDDYLDCFAD 240

Query: 241 PEITGKVGTDIEDCKCTWFVVKALELANEEQKKLLY 276
           PE  GK+GTDIED KC+W VVKALE  +EEQ K+LY
Sbjct: 241 PETLGKIGTDIEDFKCSWLVVKALERCSEEQTKILY 276


>AT5G47770.1 | Symbols: FPS1 | FPS1 (FARNESYL DIPHOSPHATE SYNTHASE
           1); dimethylallyltranstransferase/
           geranyltranstransferase | chr5:19345297-19347415 FORWARD
          Length = 384

 Score =  406 bits (1043), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 185/275 (67%), Positives = 231/275 (84%)

Query: 2   SDLKSKFLEVYSTLKSQLLNDPAFEFTDDSRQWLDRMLDYNVPRGKLYRGLAVIDCYKSL 61
           +DLKS FL VYS LKS LL+DP+FEFT++SR W+DRMLDYNV  GKL RGL+V+D +K L
Sbjct: 44  TDLKSTFLNVYSVLKSDLLHDPSFEFTNESRLWVDRMLDYNVRGGKLNRGLSVVDSFKLL 103

Query: 62  KEGKELTNDEMLLACVLGWCIEWLQACAVVLDDIMDNSHTRRGQPCWYMLPKVGFIAIND 121
           K+G +LT  E+ L+C LGWCIEWLQA  +VLDDIMDNS TRRGQPCW+ +P+VG +AIND
Sbjct: 104 KQGNDLTEQEVFLSCALGWCIEWLQAYFLVLDDIMDNSVTRRGQPCWFRVPQVGMVAIND 163

Query: 122 GIILPNQVRRILKMYFREKPYYVHLLELFHEVEFQSVCGEMIDLISTHKGEQDLSNYSLS 181
           GI+L N + RILK +FR+KPYYV L++LF+EVE Q+ CG+MIDLI+T +GE+DL+ YSLS
Sbjct: 164 GILLRNHIHRILKKHFRDKPYYVDLVDLFNEVELQTACGQMIDLITTFEGEKDLAKYSLS 223

Query: 182 LYHRIVEYKSAYYSIYLPVACSLLMAGENLESHAEAKKILIEITIYFQVQDDYQDCFGDP 241
           ++ RIV+YK+AYYS YLPVAC+LLMAGENLE+H + K +L+++ IYFQVQDDY DCF DP
Sbjct: 224 IHRRIVQYKTAYYSFYLPVACALLMAGENLENHIDVKNVLVDMGIYFQVQDDYLDCFADP 283

Query: 242 EITGKVGTDIEDCKCTWFVVKALELANEEQKKLLY 276
           E  GK+GTDIED KC+W VVKALE  +EEQ K+LY
Sbjct: 284 ETLGKIGTDIEDFKCSWLVVKALERCSEEQTKILY 318


>AT4G17190.2 | Symbols: FPS2 | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE
           2); dimethylallyltranstransferase/
           geranyltranstransferase | chr4:9648743-9650346 REVERSE
          Length = 247

 Score =  277 bits (709), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 126/181 (69%), Positives = 151/181 (83%)

Query: 96  MDNSHTRRGQPCWYMLPKVGFIAINDGIILPNQVRRILKMYFREKPYYVHLLELFHEVEF 155
           MDNS TRRGQPCW+  PKVG IAINDGI+L N + RILK +FRE PYYV L++LF+EVEF
Sbjct: 1   MDNSVTRRGQPCWFRKPKVGMIAINDGILLRNHIHRILKKHFREMPYYVDLVDLFNEVEF 60

Query: 156 QSVCGEMIDLISTHKGEQDLSNYSLSLYHRIVEYKSAYYSIYLPVACSLLMAGENLESHA 215
           Q+ CG+MIDLI+T  GE+DLS YSL ++ RIVEYK+AYYS YLPVAC+LLMAGENLE+H 
Sbjct: 61  QTACGQMIDLITTFDGEKDLSKYSLQIHRRIVEYKTAYYSFYLPVACALLMAGENLENHT 120

Query: 216 EAKKILIEITIYFQVQDDYQDCFGDPEITGKVGTDIEDCKCTWFVVKALELANEEQKKLL 275
           + K +L+++ IYFQVQDDY DCF DPE  GK+GTDIED KC+W VVKALE  +EEQ K+L
Sbjct: 121 DVKTVLVDMGIYFQVQDDYLDCFADPETLGKIGTDIEDFKCSWLVVKALERCSEEQTKIL 180

Query: 276 Y 276
           Y
Sbjct: 181 Y 181