Jatropha Genome Database

JcCA0138821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0138821.10 + phase: 0 
         (73 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G19860.2 | Symbols:  | basic helix-loop-helix (bHLH) family p...    49   9e-07

>AT3G19860.2 | Symbols:  | basic helix-loop-helix (bHLH) family
          protein | chr3:6903842-6905863 FORWARD
          Length = 337

 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 33/54 (61%), Gaps = 5/54 (9%)

Query: 22 PCVAPPTRSQPSQR---PESEVKD--ARKVLKADREKLRRDRLNEQFIELGNAL 70
          PC+    R  PS      E EV D  ARK  KA REKLRR++LNE F+ELGN L
Sbjct: 32 PCLLLAHRISPSPSILPAEEEVMDVSARKSQKAGREKLRREKLNEHFVELGNVL 85