Jatropha Genome Database

JcCA0138571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0138571.10 + phase: 0 /pseudo/partial
         (145 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03345.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    95   1e-20
AT5G03345.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    95   2e-20

>AT5G03345.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           endomembrane system; EXPRESSED IN: 24 plant structures;
           EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
           DOMAIN/s: Magnesium transporter (InterPro:IPR018937);
           Has 120 Blast hits to 120 proteins in 49 species: Archae
           - 0; Bacteria - 0; Metazoa - 94; Fungi - 0; Plants - 25;
           Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
           | chr5:814196-815478 FORWARD
          Length = 104

 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/145 (40%), Positives = 65/145 (44%), Gaps = 45/145 (31%)

Query: 1   MGFGFAIGTFGVLILGHATYSTIQSXRLWRRNFQDLQXMXVLFFFYLFICFPCLCLTVRI 60
           M  GF +G FGVLIL HA YSTIQ                                    
Sbjct: 1   MNLGFLVGVFGVLILSHAAYSTIQ------------------------------------ 24

Query: 61  YFCVDGCLGLCKISPFXXX---XXXXXXXXXXXXFCFWAALTVPGKFRSIHPYSDENRIV 117
                 C+GL KI                      C WAALT PGKF SIHP SDENR V
Sbjct: 25  ------CIGLLKIMEEEFSRPPINVILELIIGLALCMWAALTFPGKFLSIHPDSDENRAV 78

Query: 118 SLPANMDFMVFNHRGKVFPSEMDMK 142
            LP N DFM+FNHRG++FP ++DMK
Sbjct: 79  FLPDNSDFMIFNHRGRLFPPQIDMK 103


>AT5G03345.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           endomembrane system; EXPRESSED IN: 24 plant structures;
           EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
           DOMAIN/s: Magnesium transporter (InterPro:IPR018937);
           Has 130 Blast hits to 130 proteins in 52 species: Archae
           - 0; Bacteria - 0; Metazoa - 98; Fungi - 0; Plants - 25;
           Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
           | chr5:814196-815478 FORWARD
          Length = 104

 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/142 (40%), Positives = 69/142 (48%), Gaps = 39/142 (27%)

Query: 1   MGFGFAIGTFGVLILGHATYSTIQSXRLWRRNFQDLQXMXVLFFFYLFICFPCLCLTVRI 60
           M  GF +G FGVLIL HA YSTIQ   L +   ++                        I
Sbjct: 1   MNLGFLVGVFGVLILSHAAYSTIQYRGLLKIMEEEFS-------------------RPPI 41

Query: 61  YFCVDGCLGLCKISPFXXXXXXXXXXXXXXXFCFWAALTVPGKFRSIHPYSDENRIVSLP 120
              ++  +GL                      C WAALT PGKF SIHP SDENR V LP
Sbjct: 42  NVILELIIGLA--------------------LCMWAALTFPGKFLSIHPDSDENRAVFLP 81

Query: 121 ANMDFMVFNHRGKVFPSEMDMK 142
            N DFM+FNHRG++FP ++DMK
Sbjct: 82  DNSDFMIFNHRGRLFPPQIDMK 103