Jatropha Genome Database

JcCA0138521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0138521.10 - phase: 0 /partial
         (243 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42120.2 | Symbols: POLD2 | POLD2 (DNA POLYMERASE DELTA SMALL...   392   e-109
AT2G42120.1 | Symbols: POLD2 | POLD2 (DNA POLYMERASE DELTA SMALL...   387   e-108

>AT2G42120.2 | Symbols: POLD2 | POLD2 (DNA POLYMERASE DELTA SMALL
           SUBUNIT); DNA binding / DNA-directed DNA polymerase |
           chr2:17563282-17565965 REVERSE
          Length = 440

 Score =  392 bits (1006), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/243 (76%), Positives = 211/243 (86%)

Query: 1   MDMDGEKNLQRKQAIYSSLDETFKIQKETYRGQQYSQIYFARLHMMRTLLYSLVPHWKNH 60
           M++D EK  +RKQ+ Y+SLDE F+IQKE YRGQQYSQIYFARLH+MRTLLYSL P WK+H
Sbjct: 1   MEIDSEKIHERKQSDYNSLDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWKSH 60

Query: 61  LTVCTILGLEEGKECIIVGTLYKHMKLKPCILDEYSKERSAVPLVKPHNFMHPDDYLVLE 120
           L VC +LGLE+GKECIIVGTL+KHMKLKPC+LDEYSKERS  PLVKPHNFMHPDD L+LE
Sbjct: 61  LPVCKVLGLEKGKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLILE 120

Query: 121 DESGRVKLGGDMLSPSAYVTGVVVALHGKETSAGDFLVLDVLEAGLAPQIELPLQPREDK 180
           DESGRVKL G  LSP+ YVTGVVVALHGKET+AG+F V DVLEAGL PQIE P+  +EDK
Sbjct: 121 DESGRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQEDK 180

Query: 181 YVVFVSGLSLGSIRSNPLQFQLLVDHITGHLGDEQEQGIVAEIVHVVVAGNSVEIPVGLL 240
           YVV +SGL +GS  +NPLQFQLLVDHITGHLGDE+EQG+ A+IVHVV+AGNS E P  L+
Sbjct: 181 YVVLLSGLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRKLI 240

Query: 241 NGQ 243
           NGQ
Sbjct: 241 NGQ 243


>AT2G42120.1 | Symbols: POLD2 | POLD2 (DNA POLYMERASE DELTA SMALL
           SUBUNIT); DNA binding / DNA-directed DNA polymerase |
           chr2:17563282-17565965 REVERSE
          Length = 441

 Score =  387 bits (993), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 185/244 (75%), Positives = 211/244 (86%), Gaps = 1/244 (0%)

Query: 1   MDMDGEKNLQRKQAIYSSL-DETFKIQKETYRGQQYSQIYFARLHMMRTLLYSLVPHWKN 59
           M++D EK  +RKQ+ Y+SL DE F+IQKE YRGQQYSQIYFARLH+MRTLLYSL P WK+
Sbjct: 1   MEIDSEKIHERKQSDYNSLQDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWKS 60

Query: 60  HLTVCTILGLEEGKECIIVGTLYKHMKLKPCILDEYSKERSAVPLVKPHNFMHPDDYLVL 119
           HL VC +LGLE+GKECIIVGTL+KHMKLKPC+LDEYSKERS  PLVKPHNFMHPDD L+L
Sbjct: 61  HLPVCKVLGLEKGKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLIL 120

Query: 120 EDESGRVKLGGDMLSPSAYVTGVVVALHGKETSAGDFLVLDVLEAGLAPQIELPLQPRED 179
           EDESGRVKL G  LSP+ YVTGVVVALHGKET+AG+F V DVLEAGL PQIE P+  +ED
Sbjct: 121 EDESGRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQED 180

Query: 180 KYVVFVSGLSLGSIRSNPLQFQLLVDHITGHLGDEQEQGIVAEIVHVVVAGNSVEIPVGL 239
           KYVV +SGL +GS  +NPLQFQLLVDHITGHLGDE+EQG+ A+IVHVV+AGNS E P  L
Sbjct: 181 KYVVLLSGLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRKL 240

Query: 240 LNGQ 243
           +NGQ
Sbjct: 241 INGQ 244