Jatropha Genome Database

JcCA0136621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0136621.10 - phase: 0 /partial
         (264 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21710.1 | Symbols: OGG1, ATOGG1 | OGG1 (8-OXOGUANINE-DNA GLY...   261   4e-70

>AT1G21710.1 | Symbols: OGG1, ATOGG1 | OGG1 (8-OXOGUANINE-DNA
           GLYCOSYLASE 1); oxidized purine base lesion DNA
           N-glycosylase | chr1:7624439-7625869 FORWARD
          Length = 365

 Score =  261 bits (666), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 118/179 (65%), Positives = 147/179 (82%)

Query: 66  STNWAPLGLIQAELFLPLTFPTGQTFRWKQTGPFQYTGTLGPHLISLKNHHENGNVYYHI 125
           +  W PL L   EL LPLTFPTGQTFRWK+TG  QY+GT+GPHL+SL+    +  V Y +
Sbjct: 37  TPKWFPLKLTHTELTLPLTFPTGQTFRWKKTGAIQYSGTIGPHLVSLRQRPGDDAVSYCV 96

Query: 126 HRSPSESAAKSALLDFLNIDISLTDMWAEFSVSDSRFSELARHLQGARVLRQDPLECLIQ 185
           H S S  +A+ ALLDFLN +ISL ++W++FS  D RF ELARHL+GARVLRQDPLECLIQ
Sbjct: 97  HCSTSPKSAELALLDFLNAEISLAELWSDFSKKDPRFGELARHLRGARVLRQDPLECLIQ 156

Query: 186 FLCSSNNNIARITKMVDFISSLGEHLGNVEGFDFHEFPSLERLAMITEQQLREAGFGYR 244
           FLCSSNNNIARITKMVDF+SSLG HLG+++GF+FH+FPSL+RL+ ++E++ R+AGFGYR
Sbjct: 157 FLCSSNNNIARITKMVDFVSSLGLHLGDIDGFEFHQFPSLDRLSRVSEEEFRKAGFGYR 215