Jatropha Genome Database

JcCA0134961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0134961.10 - phase: 0 /partial
         (185 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40660.1 | Symbols:  | ATP12 protein-related | chr5:16283650-...   249   9e-67

>AT5G40660.1 | Symbols:  | ATP12 protein-related |
           chr5:16283650-16285161 REVERSE
          Length = 325

 Score =  249 bits (635), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 121/182 (66%), Positives = 145/182 (79%)

Query: 3   DGIRPFMMPLMKLACTALERVPLTRPKIIEHLMKKFNQDLVFCRAPEDNDLTRGVYERQV 62
           +GIRPF MPLM+LACTALERVPLTR KIIEHL +K +QDLVF RAPEDNDLT  V++ QV
Sbjct: 142 EGIRPFTMPLMRLACTALERVPLTRSKIIEHLSRKIHQDLVFFRAPEDNDLTSDVHDIQV 201

Query: 63  EKIDPLLDWVKSEFGFKPVVHSSFFGGKQEEGLVKAIEDLLQKTDNFEXXXXXXXXXXXX 122
           E IDPLL+W++SEF  KP V+SS FGGKQ++ LVKA+E+LL+KT++ E            
Sbjct: 202 ESIDPLLEWIESEFRVKPKVYSSIFGGKQDDKLVKAVEELLKKTNDGELASIDALQASAH 261

Query: 123 XXXXXXGIFRGKLDIEEAIQLIRLEEDLQVDKWGLVEGGHDVDIADLRVQVSSAAVFLGL 182
                 GIF GKL I++AI+LIRLEEDLQVDKWGLVEGGHD+D+ADL+VQ+SSA VFL L
Sbjct: 262 SIVIALGIFCGKLQIDDAIKLIRLEEDLQVDKWGLVEGGHDIDVADLKVQISSATVFLAL 321

Query: 183 SR 184
           SR
Sbjct: 322 SR 323