Jatropha Genome Database

JcCA0134821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0134821.10 - phase: 1 /partial
         (87 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00040.1 | Symbols: MATK | Encodes a maturase located in the ...   100   4e-22

>ATCG00040.1 | Symbols: MATK | Encodes a maturase located in the
           trnK intron in the chloroplast genome. | chrC:2056-3636
           REVERSE
          Length = 526

 Score = 99.8 bits (247), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/72 (70%), Positives = 56/72 (77%)

Query: 16  NPRFFLFLYNSHVYEYESILFFLRNQSFHLRSTFSRVLLERIYFYGKIEHFAEVFANDFQ 75
           NPRFFLFLYNSHV EYESI FFLR +S HLRST   VL ERI FYGKI HF +VF N+F 
Sbjct: 225 NPRFFLFLYNSHVCEYESIFFFLRKRSSHLRSTSYEVLFERIVFYGKIHHFFKVFVNNFP 284

Query: 76  TILWLVKYPFMH 87
            IL L+K PF+H
Sbjct: 285 AILGLLKDPFIH 296