Jatropha Genome Database

JcCA0134721.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0134721.20 + phase: 1 /TE
         (808 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29090.1 | Symbols:  | reverse transcriptase, putative / RNA-...   124   2e-28
ATMG00310.1 | Symbols: ORF154 | hypothetical protein | chrM:9088...    96   9e-20
ATMG01250.1 | Symbols: ORF102 | hypothetical protein | chrM:3105...    83   8e-16
AT3G24255.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    65   2e-10

>AT4G29090.1 | Symbols:  | reverse transcriptase, putative /
           RNA-dependent DNA polymerase, putative |
           chr4:14333528-14335255 FORWARD
          Length = 575

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 120/233 (51%), Gaps = 13/233 (5%)

Query: 259 AIPSFCMSSFLIPVSILVELQRLMNFYWWGGK-----MRWLSWERLCVAKENGGLGFRHL 313
           A+P++ M+ FL+P ++  ++  ++  +WW  K     M W +W+ L   K  GG+GF+ +
Sbjct: 2   ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61

Query: 314 QSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDAI 373
           ++FNLALLGK  WR+L    SL             + L A +G  PSFVW+ I A+++ +
Sbjct: 62  EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121

Query: 374 CSGFRWRIGDGQSVNVWTELWL-LRDNQFQVPLPILPGVEH------IRVSDLILTHGAR 426
             G R  +G+G+ + +W   WL  +     + +  +P  E+      ++VSDLI   G R
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESG-R 180

Query: 427 AWNLPLIHGLFNPSIAEIITSIPLAANVQDDILIWHWTDSGIYSVKSGYRIVA 479
            W   +I  LF     ++I  +        D   W +T SG Y+VKSGY ++ 
Sbjct: 181 EWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLT 233


>ATMG00310.1 | Symbols: ORF154 | hypothetical protein |
           chrM:90883-91347 REVERSE
          Length = 154

 Score = 95.9 bits (237), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 10/156 (6%)

Query: 259 AIPSFCMSSFLIPVSILVELQRLMNFYWWGG-----KMRWLSWERLCVAKEN-GGLGFRH 312
           A+P + MS F +   +  +L   M  +WW       K+ W++W++LC +KE+ GGLGFR 
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 313 LQSFNLALLGKHCWRLLHTTNSLXXXXXXXXXXPSGNFLGAGVGRNPSFVWRGICAAKDA 372
           L  FN ALL K  +R++H  ++L          P  + +   VG  PS+ WR I   ++ 
Sbjct: 62  LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGREL 121

Query: 373 ICSGFRWRIGDGQSVNVWTELWLLRDNQFQVPLPIL 408
           +  G    IGDG    VW + W++     + PLP L
Sbjct: 122 LSRGLLRTIGDGIHTKVWLDRWIMD----ETPLPPL 153


>ATMG01250.1 | Symbols: ORF102 | hypothetical protein |
           chrM:310514-310882 FORWARD
          Length = 122

 Score = 82.8 bits (203), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 50/67 (74%)

Query: 79  VNGDEVGPIIPERGLRQGCPLSPYLFVLCAEGLSKLFCKSEREGRLTGCRVSRAAPQLSH 138
           +NG   G + P RGLRQG PLSPYLF+LC E LS L  +++ +GRL G RVS  +P+++H
Sbjct: 14  INGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINH 73

Query: 139 LLFADDS 145
           LLFADD+
Sbjct: 74  LLFADDT 80


>AT3G24255.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; CONTAINS InterPro DOMAIN/s:
           RNA-directed DNA polymerase (reverse transcriptase),
           related (InterPro:IPR015706); BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT3G23910.1);
           Has 2302 Blast hits to 2235 proteins in 74 species:
           Archae - 4; Bacteria - 15; Metazoa - 871; Fungi - 12;
           Plants - 1295; Viruses - 0; Other Eukaryotes - 105
           (source: NCBI BLink). | chr3:8789471-8793208 FORWARD
          Length = 746

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 5/114 (4%)

Query: 209 RYLGLPSLIGRERRRVFSFLKDHVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSF 268
           RYLGLP L  +     +  L + +R  +  W  + LS AG+  LI +V  ++ +F MS+F
Sbjct: 26  RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85

Query: 269 LIPVSILVELQRLMNFYWWGG-----KMRWLSWERLCVAKENGGLGFRHLQSFN 317
            +P + + E+  + + + W G     K   ++W  +C  K+ GGLG R L+  N
Sbjct: 86  RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEAN 139