Jatropha Genome Database

JcCA0134311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0134311.10 + phase: 2 /partial
         (82 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26000.1 | Symbols:  | F-box family protein | chr3:9507042-95...    68   1e-12

>AT3G26000.1 | Symbols:  | F-box family protein |
           chr3:9507042-9508542 REVERSE
          Length = 453

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/51 (62%), Positives = 39/51 (76%)

Query: 1   AEGCQQKEHSTQPCRACTLCIARCVQCGRCINDSEYEETFCLELLCSDCWK 51
           AE C+ K+  ++ CRAC+LCI RC  CGRCI D+EYEE FCLELLC+ C K
Sbjct: 396 AEDCKGKKKGSEECRACSLCIQRCYHCGRCIIDTEYEEMFCLELLCAVCSK 446