Jatropha Genome Database

JcCA0133161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0133161.10 + phase: 0 /partial
         (299 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20410.1 | Symbols:  | activating signal cointegrator-related...   219   1e-57

>AT2G20410.1 | Symbols:  | activating signal cointegrator-related |
           chr2:8802561-8804194 FORWARD
          Length = 339

 Score =  219 bits (559), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 104/191 (54%), Positives = 131/191 (68%), Gaps = 12/191 (6%)

Query: 27  GRLWIHAASKVPEEETIKAMEDFYREIYALNGITDIKFPEHYPVSRXXXXXXXXXXXXXX 86
           GRLWIHAASKVP+E TIKAME+FY++IYA++GITDI+FP+HYPVSR              
Sbjct: 39  GRLWIHAASKVPDEATIKAMEEFYQQIYAVDGITDIQFPQHYPVSRLIGCVEVVGCVTSD 98

Query: 87  XXASWEAIPVGARLEGQTDFCWLCEHPQKLLVPFEMRGYQRVYNLEKKIYEAAVRGLIPV 146
              +W+A+P G RLEGQT+FCWLCE PQKL++PFEMRGYQ VYNLE KIY AA RGL+P 
Sbjct: 99  ELQNWDALPQGVRLEGQTNFCWLCEKPQKLIIPFEMRGYQGVYNLENKIYVAAARGLMPS 158

Query: 147 KGPMPVKFPLPNPRDPFSLRPGSVAMLPEKASE------------VEKSSTLTXXXXXXX 194
           +    VKFPLP+P+DPFSL+PGS+    ++  E            +++ ++LT       
Sbjct: 159 QNSFKVKFPLPDPKDPFSLKPGSIPCTMQEKKELDSKQVTSLTAAIKQVTSLTAAIAGAK 218

Query: 195 XXXTQFSKKDQ 205
              TQFSKK Q
Sbjct: 219 AAATQFSKKGQ 229