Jatropha Genome Database

JcCA0132271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0132271.10 + phase: 0 /partial
         (516 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10340.1 | Symbols: PAL4 | PAL4 (Phenylalanine ammonia-lyase ...   696   0.0  
AT2G37040.1 | Symbols: pal1, ATPAL1 | pal1 (Phe ammonia lyase 1)...   681   0.0  
AT3G53260.1 | Symbols: PAL2, ATPAL2 | PAL2; phenylalanine ammoni...   680   0.0  
AT5G04230.1 | Symbols: PAL3, ATPAL3 | PAL3 (PHENYL ALANINE AMMON...   658   0.0  

>AT3G10340.1 | Symbols: PAL4 | PAL4 (Phenylalanine ammonia-lyase 4);
           ammonia ligase/ ammonia-lyase/ catalytic |
           chr3:3204260-3207809 FORWARD
          Length = 707

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/506 (68%), Positives = 403/506 (79%), Gaps = 9/506 (1%)

Query: 18  HWQKAAESLQSSHFDEVYEMASQFANAQTVDIQGTSLTVAEVTAVARRSNVS-VQLNETV 76
           +W   AE+L+ SH DEV  M  ++   + V + G +LT+ +V AVAR    S V+L E  
Sbjct: 19  NWNATAEALKGSHLDEVKRMVKEY-RKEAVKLGGETLTIGQVAAVARGGGGSTVELAEE- 76

Query: 77  AGDRVRQSADWVSFNISHGIDIYGVTTGFGATSHRRTTKTADLQTELIRFLNAGVIG--- 133
           A   V+ S++WV  +++ G D YGVTTGFGATSHRRT +   LQ ELIRFLNAG+ G   
Sbjct: 77  ARAGVKASSEWVMESMNRGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGPGA 136

Query: 134 ---KENLPLSYSKAAMLVRTNTLMQGYSGIRWEILESISKLMNLNLIPKLPLRGTITASG 190
                 LP   ++AAMLVR NTL+QGYSGIR+EILE+I+KL+N  + P LPLRGTITASG
Sbjct: 137 GDTSHTLPKPTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHEITPCLPLRGTITASG 196

Query: 191 DLVPLSYIAGLLTGRHNSKVVTVQGEEITGLEALKRAGIEAPFELQAKEGLALXXXXXXX 250
           DLVPLSYIAGLLTGR NSK V   GE +T  EA K AG+ + FELQ KEGLAL       
Sbjct: 197 DLVPLSYIAGLLTGRPNSKAVGPSGETLTASEAFKLAGVSSFFELQPKEGLALVNGTAVG 256

Query: 251 XXXXXXXCFDANILAFLAEILSALFCEVMHGKPEYTDPLTHQLKHHPGQIEAAAIMKHLL 310
                   FDANILA L+E++SA+F EVM GKPE+TD LTH+LKHHPGQIEAAAIM+H+L
Sbjct: 257 SGLASTVLFDANILAVLSEVMSAMFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL 316

Query: 311 DESDYMKEAKIRNEKDPLTKPKQDRYAVRTSPQWLGPQIEVIRAATHSIEREINSVNDNP 370
           D S Y+KEA++ +E DPL KPKQDRYA+RTSPQWLGPQIEVIRAAT  IEREINSVNDNP
Sbjct: 317 DGSSYVKEAQLLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNP 376

Query: 371 IIDVSRDLALHGGNFQGTPIGVSMDNLRIAIAAIGKLMFAQFSELVCDYYNNGLPSNLSG 430
           +IDVSR+ ALHGGNFQGTPIGV+MDN R+AIA+IGKLMFAQFSELV D+YNNGLPSNLSG
Sbjct: 377 LIDVSRNKALHGGNFQGTPIGVAMDNSRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSG 436

Query: 431 GPNPSLDYGLKGAEIAMASYCSELQFLANPVTSHVQSAEQHNQDVNSLGLISARKSAEAI 490
           G NPSLDYG KGAEIAMASYCSELQFLANPVT+HVQSAEQHNQDVNSLGLIS+RK+AEA+
Sbjct: 437 GRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAV 496

Query: 491 EILKLMSATFMVALCQAIDLRHLEEN 516
           +ILKLMS T++VALCQA+DLRHLEEN
Sbjct: 497 DILKLMSTTYLVALCQAVDLRHLEEN 522


>AT2G37040.1 | Symbols: pal1, ATPAL1 | pal1 (Phe ammonia lyase 1);
           phenylalanine ammonia-lyase | chr2:15557602-15560237
           REVERSE
          Length = 725

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/506 (67%), Positives = 400/506 (79%), Gaps = 9/506 (1%)

Query: 18  HWQKAAESLQSSHFDEVYEMASQFANAQTVDIQGTSLTVAEVTAVARRSN-VSVQLNETV 76
           +W  AAE ++ SH DEV  M ++F     V++ G +LT+ +V A++   N V V+L+ET 
Sbjct: 37  NWGAAAEQMKGSHLDEVKRMVAEF-RKPVVNLGGETLTIGQVAAISTIGNSVKVELSET- 94

Query: 77  AGDRVRQSADWVSFNISHGIDIYGVTTGFGATSHRRTTKTADLQTELIRFLNAGVIG--K 134
           A   V  S+DWV  +++ G D YGVTTGFGATSHRRT     LQ ELIRFLNAG+ G  K
Sbjct: 95  ARAGVNASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGVALQKELIRFLNAGIFGSTK 154

Query: 135 EN---LPLSYSKAAMLVRTNTLMQGYSGIRWEILESISKLMNLNLIPKLPLRGTITASGD 191
           E    LP S ++AAMLVR NTL+QG+SGIR+EILE+I+  +N N+ P LPLRGTITASGD
Sbjct: 155 ETSHTLPHSATRAAMLVRINTLLQGFSGIRFEILEAITSFLNNNITPSLPLRGTITASGD 214

Query: 192 LVPLSYIAGLLTGRHNSKVVTVQGEEITGLEALKRAGIEAPF-ELQAKEGLALXXXXXXX 250
           LVPLSYIAGLLTGR NSK     GE +T  EA K AGI + F +LQ KEGLAL       
Sbjct: 215 LVPLSYIAGLLTGRPNSKATGPNGEALTAEEAFKLAGISSGFFDLQPKEGLALVNGTAVG 274

Query: 251 XXXXXXXCFDANILAFLAEILSALFCEVMHGKPEYTDPLTHQLKHHPGQIEAAAIMKHLL 310
                   F+ N+L+ LAEILSA+F EVM GKPE+TD LTH+LKHHPGQIEAAAIM+H+L
Sbjct: 275 SGMASMVLFETNVLSVLAEILSAVFAEVMSGKPEFTDHLTHRLKHHPGQIEAAAIMEHIL 334

Query: 311 DESDYMKEAKIRNEKDPLTKPKQDRYAVRTSPQWLGPQIEVIRAATHSIEREINSVNDNP 370
           D S YMK A+  +E DPL KPKQDRYA+RTSPQWLGPQIEVIR AT SIEREINSVNDNP
Sbjct: 335 DGSSYMKLAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRYATKSIEREINSVNDNP 394

Query: 371 IIDVSRDLALHGGNFQGTPIGVSMDNLRIAIAAIGKLMFAQFSELVCDYYNNGLPSNLSG 430
           +IDVSR+ A+HGGNFQGTPIGVSMDN R+AIAAIGKLMFAQFSELV D+YNNGLPSNL+ 
Sbjct: 395 LIDVSRNKAIHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLTA 454

Query: 431 GPNPSLDYGLKGAEIAMASYCSELQFLANPVTSHVQSAEQHNQDVNSLGLISARKSAEAI 490
             NPSLDYG KGAEIAMASYCSELQ+LANPVTSHVQSAEQHNQDVNSLGLIS+RK++EA+
Sbjct: 455 SRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTSEAV 514

Query: 491 EILKLMSATFMVALCQAIDLRHLEEN 516
           +ILKLMS TF+VA+CQA+DLRHLEEN
Sbjct: 515 DILKLMSTTFLVAICQAVDLRHLEEN 540


>AT3G53260.1 | Symbols: PAL2, ATPAL2 | PAL2; phenylalanine
           ammonia-lyase | chr3:19744256-19746619 REVERSE
          Length = 717

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/506 (67%), Positives = 400/506 (79%), Gaps = 9/506 (1%)

Query: 18  HWQKAAESLQSSHFDEVYEMASQFANAQTVDIQGTSLTVAEVTAVAR-RSNVSVQLNETV 76
           +W  AA+ ++ SH DEV +M  ++     V++ G +LT+ +V A++    +V V+L ET 
Sbjct: 29  NWGLAADQMKGSHLDEVKKMVEEYRRP-VVNLGGETLTIGQVAAISTVGGSVKVELAETS 87

Query: 77  AGDRVRQSADWVSFNISHGIDIYGVTTGFGATSHRRTTKTADLQTELIRFLNAGVIG--K 134
               V+ S+DWV  +++ G D YGVTTGFGATSHRRT     LQTELIRFLNAG+ G  K
Sbjct: 88  RAG-VKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGTALQTELIRFLNAGIFGNTK 146

Query: 135 EN---LPLSYSKAAMLVRTNTLMQGYSGIRWEILESISKLMNLNLIPKLPLRGTITASGD 191
           E    LP S ++AAMLVR NTL+QGYSGIR+EILE+I+ L+N N+ P LPLRGTITASGD
Sbjct: 147 ETCHTLPQSATRAAMLVRVNTLLQGYSGIRFEILEAITSLLNHNISPSLPLRGTITASGD 206

Query: 192 LVPLSYIAGLLTGRHNSKVVTVQGEEITGLEALKRAGIEAPF-ELQAKEGLALXXXXXXX 250
           LVPLSYIAGLLTGR NSK     GE +T  EA ++AGI   F +LQ KEGLAL       
Sbjct: 207 LVPLSYIAGLLTGRPNSKATGPDGESLTAKEAFEKAGISTGFFDLQPKEGLALVNGTAVG 266

Query: 251 XXXXXXXCFDANILAFLAEILSALFCEVMHGKPEYTDPLTHQLKHHPGQIEAAAIMKHLL 310
                   F+AN+ A LAE+LSA+F EVM GKPE+TD LTH+LKHHPGQIEAAAIM+H+L
Sbjct: 267 SGMASMVLFEANVQAVLAEVLSAIFAEVMSGKPEFTDHLTHRLKHHPGQIEAAAIMEHIL 326

Query: 311 DESDYMKEAKIRNEKDPLTKPKQDRYAVRTSPQWLGPQIEVIRAATHSIEREINSVNDNP 370
           D S YMK A+  +E DPL KPKQDRYA+RTSPQWLGPQIEVIR AT SIEREINSVNDNP
Sbjct: 327 DGSSYMKLAQKVHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRQATKSIEREINSVNDNP 386

Query: 371 IIDVSRDLALHGGNFQGTPIGVSMDNLRIAIAAIGKLMFAQFSELVCDYYNNGLPSNLSG 430
           +IDVSR+ A+HGGNFQGTPIGVSMDN R+AIAAIGKLMFAQFSELV D+YNNGLPSNL+ 
Sbjct: 387 LIDVSRNKAIHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLTA 446

Query: 431 GPNPSLDYGLKGAEIAMASYCSELQFLANPVTSHVQSAEQHNQDVNSLGLISARKSAEAI 490
             NPSLDYG KGAEIAMASYCSELQ+LANPVTSHVQSAEQHNQDVNSLGLIS+RK++EA+
Sbjct: 447 SSNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTSEAV 506

Query: 491 EILKLMSATFMVALCQAIDLRHLEEN 516
           +ILKLMS TF+V +CQA+DLRHLEEN
Sbjct: 507 DILKLMSTTFLVGICQAVDLRHLEEN 532


>AT5G04230.1 | Symbols: PAL3, ATPAL3 | PAL3 (PHENYL ALANINE
           AMMONIA-LYASE 3); phenylalanine ammonia-lyase |
           chr5:1160831-1163707 FORWARD
          Length = 694

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/506 (64%), Positives = 392/506 (77%), Gaps = 11/506 (2%)

Query: 18  HWQKAAESLQSSHFDEVYEMASQFANAQTVDIQGTSLTVAEVTAVARRSNVSVQLNETVA 77
           +W  AAE+L+ SH +EV +M   +    TV + G +LT+ +V AVA     +V+L+E   
Sbjct: 16  NWNVAAEALKGSHLEEVKKMVKDYRKG-TVQLGGETLTIGQVAAVAS-GGPTVELSEEAR 73

Query: 78  GDRVRQSADWVSFNISHGIDIYGVTTGFGATSHRRTTKTADLQTELIRFLNAGVIGKEN- 136
           G  V+ S+DWV  +++   D YG+TTGFG++S RRT + A LQ ELIR+LNAG+    N 
Sbjct: 74  GG-VKASSDWVMESMNRDTDTYGITTGFGSSSRRRTDQGAALQKELIRYLNAGIFATGNE 132

Query: 137 -------LPLSYSKAAMLVRTNTLMQGYSGIRWEILESISKLMNLNLIPKLPLRGTITAS 189
                  LP   ++AAML+R NTL+QGYSGIR+EILE+I+ L+N  + P LPLRGTITAS
Sbjct: 133 DDDRSNTLPRPATRAAMLIRVNTLLQGYSGIRFEILEAITTLLNCKITPLLPLRGTITAS 192

Query: 190 GDLVPLSYIAGLLTGRHNSKVVTVQGEEITGLEALKRAGIEAPFELQAKEGLALXXXXXX 249
           GDLVPLSYIAG L GR NS+ V   GE +T LEA K AG+ + FEL+ KEGLAL      
Sbjct: 193 GDLVPLSYIAGFLIGRPNSRSVGPSGEILTALEAFKLAGVSSFFELRPKEGLALVNGTAV 252

Query: 250 XXXXXXXXCFDANILAFLAEILSALFCEVMHGKPEYTDPLTHQLKHHPGQIEAAAIMKHL 309
                    +DANIL   +E+ SA+F EVM GKPE+TD LTH+LKHHPGQIEAAAIM+H+
Sbjct: 253 GSALASTVLYDANILVVFSEVASAMFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHI 312

Query: 310 LDESDYMKEAKIRNEKDPLTKPKQDRYAVRTSPQWLGPQIEVIRAATHSIEREINSVNDN 369
           LD S Y+KEA   ++ DPL KPKQDRYA+RTSPQWLGPQIEVIRAAT  IEREINSVNDN
Sbjct: 313 LDGSSYVKEALHLHKIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDN 372

Query: 370 PIIDVSRDLALHGGNFQGTPIGVSMDNLRIAIAAIGKLMFAQFSELVCDYYNNGLPSNLS 429
           P+IDVSR+ A+HGGNFQGTPIGV+MDN R+A+A+IGKLMFAQF+ELV D+YNNGLPSNLS
Sbjct: 373 PLIDVSRNKAIHGGNFQGTPIGVAMDNTRLALASIGKLMFAQFTELVNDFYNNGLPSNLS 432

Query: 430 GGPNPSLDYGLKGAEIAMASYCSELQFLANPVTSHVQSAEQHNQDVNSLGLISARKSAEA 489
           GG NPSLDYGLKGAE+AMASYCSELQFLANPVT+HV+SA QHNQDVNSLGLIS+R +AEA
Sbjct: 433 GGRNPSLDYGLKGAEVAMASYCSELQFLANPVTNHVESASQHNQDVNSLGLISSRTTAEA 492

Query: 490 IEILKLMSATFMVALCQAIDLRHLEE 515
           + ILKLMS T++VALCQA DLRHLEE
Sbjct: 493 VVILKLMSTTYLVALCQAFDLRHLEE 518