Jatropha Genome Database

JcCA0132221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0132221.10 + phase: 0 /partial
         (420 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60600.3 | Symbols: GCPE, ISPG, CSB3, CLB4, HDS | HDS (4-HYDR...   748   0.0  
AT5G60600.1 | Symbols: GCPE, ISPG, CSB3, CLB4, HDS | HDS (4-HYDR...   747   0.0  
AT5G60600.2 | Symbols: GCPE, ISPG, CSB3, CLB4, HDS | HDS (4-HYDR...   741   0.0  

>AT5G60600.3 | Symbols: GCPE, ISPG, CSB3, CLB4, HDS | HDS
           (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE); 4
           iron, 4 sulfur cluster binding /
           4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
           chr5:24359447-24363019 FORWARD
          Length = 717

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/444 (79%), Positives = 395/444 (88%), Gaps = 24/444 (5%)

Query: 1   MATGTVPASFTGLKARESSLGFGKSMDFVRVCDLKRIKSGRKKISMIRNSNPGPEMVELQ 60
           MATG +PA  +G+K  +S +GFGKSM+ VR+CD++ ++S R+++S+IRNSN G ++ ELQ
Sbjct: 1   MATGVLPAPVSGIKIPDSKVGFGKSMNLVRICDVRSLRSARRRVSVIRNSNQGSDLAELQ 60

Query: 61  PASEGSPLLVPRQKYCESVHKTVRRKTRTVMVGNVALGSDHPIRVQTMTTSDTKDVAGTV 120
           PASEGSPLLVPRQKYCES+HKTVRRKTRTVMVGNVALGS+HPIR+QTMTTSDTKD+ GTV
Sbjct: 61  PASEGSPLLVPRQKYCESLHKTVRRKTRTVMVGNVALGSEHPIRIQTMTTSDTKDITGTV 120

Query: 121 EQVMRIADQGANLVRITVQGKREADAAFEIKNTLVQKNYNIPLVADIHFAPTVALRVAEC 180
           ++VMRIAD+GA++VRITVQGK+EADA FEIK+ LVQ NYNIPLVADIHFAPTVALRVAEC
Sbjct: 121 DEVMRIADKGADIVRITVQGKKEADACFEIKDKLVQLNYNIPLVADIHFAPTVALRVAEC 180

Query: 181 FDKIRVNPGNFADRRAQFEKLEYTDEDYQKELEHIEQVFTPLVEKCKKYGRAMRIGTNHG 240
           FDKIRVNPGNFADRRAQFE ++YT+++YQKEL+HIEQVFTPLVEKCKKYGRAMRIGTNHG
Sbjct: 181 FDKIRVNPGNFADRRAQFETIDYTEDEYQKELQHIEQVFTPLVEKCKKYGRAMRIGTNHG 240

Query: 241 SLSDRIMSYYGDSPRG------------------------NASNPVIMVQAYRLLVAEMY 276
           SLSDRIMSYYGDSPRG                         ASNPVIMVQAYRLLVAEMY
Sbjct: 241 SLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVIMVQAYRLLVAEMY 300

Query: 277 VQGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLA 336
           V GWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPE+EIDPCRRLA
Sbjct: 301 VHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLA 360

Query: 337 NLGMRASAIQQGVAPFEEKHRHYFDFQRRSGQLPVQKEGEEVDYRGVLHRDGSVLMSVSL 396
           NLG +A+ +QQGVAPFEEKHRHYFDFQRR+G LPVQKEGEEVDYR VLHRDGSVLMS+SL
Sbjct: 361 NLGTKAAKLQQGVAPFEEKHRHYFDFQRRTGDLPVQKEGEEVDYRNVLHRDGSVLMSISL 420

Query: 397 DQLKAPELLYKSLAAKLVVGMPLR 420
           DQLKAPELLY+SLA KLVVGMP +
Sbjct: 421 DQLKAPELLYRSLATKLVVGMPFK 444


>AT5G60600.1 | Symbols: GCPE, ISPG, CSB3, CLB4, HDS | HDS
           (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE); 4
           iron, 4 sulfur cluster binding /
           4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
           chr5:24359447-24363274 FORWARD
          Length = 741

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/444 (79%), Positives = 395/444 (88%), Gaps = 24/444 (5%)

Query: 1   MATGTVPASFTGLKARESSLGFGKSMDFVRVCDLKRIKSGRKKISMIRNSNPGPEMVELQ 60
           MATG +PA  +G+K  +S +GFGKSM+ VR+CD++ ++S R+++S+IRNSN G ++ ELQ
Sbjct: 1   MATGVLPAPVSGIKIPDSKVGFGKSMNLVRICDVRSLRSARRRVSVIRNSNQGSDLAELQ 60

Query: 61  PASEGSPLLVPRQKYCESVHKTVRRKTRTVMVGNVALGSDHPIRVQTMTTSDTKDVAGTV 120
           PASEGSPLLVPRQKYCES+HKTVRRKTRTVMVGNVALGS+HPIR+QTMTTSDTKD+ GTV
Sbjct: 61  PASEGSPLLVPRQKYCESLHKTVRRKTRTVMVGNVALGSEHPIRIQTMTTSDTKDITGTV 120

Query: 121 EQVMRIADQGANLVRITVQGKREADAAFEIKNTLVQKNYNIPLVADIHFAPTVALRVAEC 180
           ++VMRIAD+GA++VRITVQGK+EADA FEIK+ LVQ NYNIPLVADIHFAPTVALRVAEC
Sbjct: 121 DEVMRIADKGADIVRITVQGKKEADACFEIKDKLVQLNYNIPLVADIHFAPTVALRVAEC 180

Query: 181 FDKIRVNPGNFADRRAQFEKLEYTDEDYQKELEHIEQVFTPLVEKCKKYGRAMRIGTNHG 240
           FDKIRVNPGNFADRRAQFE ++YT+++YQKEL+HIEQVFTPLVEKCKKYGRAMRIGTNHG
Sbjct: 181 FDKIRVNPGNFADRRAQFETIDYTEDEYQKELQHIEQVFTPLVEKCKKYGRAMRIGTNHG 240

Query: 241 SLSDRIMSYYGDSPRG------------------------NASNPVIMVQAYRLLVAEMY 276
           SLSDRIMSYYGDSPRG                         ASNPVIMVQAYRLLVAEMY
Sbjct: 241 SLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVIMVQAYRLLVAEMY 300

Query: 277 VQGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLA 336
           V GWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPE+EIDPCRRLA
Sbjct: 301 VHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLA 360

Query: 337 NLGMRASAIQQGVAPFEEKHRHYFDFQRRSGQLPVQKEGEEVDYRGVLHRDGSVLMSVSL 396
           NLG +A+ +QQGVAPFEEKHRHYFDFQRR+G LPVQKEGEEVDYR VLHRDGSVLMS+SL
Sbjct: 361 NLGTKAAKLQQGVAPFEEKHRHYFDFQRRTGDLPVQKEGEEVDYRNVLHRDGSVLMSISL 420

Query: 397 DQLKAPELLYKSLAAKLVVGMPLR 420
           DQLKAPELLY+SLA KLVVGMP +
Sbjct: 421 DQLKAPELLYRSLATKLVVGMPFK 444


>AT5G60600.2 | Symbols: GCPE, ISPG, CSB3, CLB4, HDS | HDS
           (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE); 4
           iron, 4 sulfur cluster binding /
           4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
           chr5:24359447-24363274 FORWARD
          Length = 740

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/444 (79%), Positives = 394/444 (88%), Gaps = 25/444 (5%)

Query: 1   MATGTVPASFTGLKARESSLGFGKSMDFVRVCDLKRIKSGRKKISMIRNSNPGPEMVELQ 60
           MATG +PA  +G+K  +S +GFGKSM+ VR+CD++ ++S R+++S+IRNSN G ++ ELQ
Sbjct: 1   MATGVLPAPVSGIKIPDSKVGFGKSMNLVRICDVRSLRSARRRVSVIRNSNQGSDLAELQ 60

Query: 61  PASEGSPLLVPRQKYCESVHKTVRRKTRTVMVGNVALGSDHPIRVQTMTTSDTKDVAGTV 120
           PASEGSPLLVPRQKYCES+HKTVRRKTRTVMVGNVALGS+HPIR+QTMTTSDTKD+ GTV
Sbjct: 61  PASEGSPLLVPRQKYCESLHKTVRRKTRTVMVGNVALGSEHPIRIQTMTTSDTKDITGTV 120

Query: 121 EQVMRIADQGANLVRITVQGKREADAAFEIKNTLVQKNYNIPLVADIHFAPTVALRVAEC 180
           ++VMRIAD+GA++VRITVQGK+EADA FEIK+ LVQ NYNIPLVADIHFAPTVALRVAEC
Sbjct: 121 DEVMRIADKGADIVRITVQGKKEADACFEIKDKLVQLNYNIPLVADIHFAPTVALRVAEC 180

Query: 181 FDKIRVNPGNFADRRAQFEKLEYTDEDYQKELEHIEQVFTPLVEKCKKYGRAMRIGTNHG 240
           FDKIRVNPGNFADRRAQFE ++YT+++YQKEL+HIEQVFTPLVEKCKKYGRAMRIGTNHG
Sbjct: 181 FDKIRVNPGNFADRRAQFETIDYTEDEYQKELQHIEQVFTPLVEKCKKYGRAMRIGTNHG 240

Query: 241 SLSDRIMSYYGDSPRG------------------------NASNPVIMVQAYRLLVAEMY 276
           SLSDRIMSYYGDSPRG                         ASNPVIMVQAYRLLVAEMY
Sbjct: 241 SLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVIMVQAYRLLVAEMY 300

Query: 277 VQGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLA 336
           V GWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPE+EIDPCRRLA
Sbjct: 301 VHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLA 360

Query: 337 NLGMRASAIQQGVAPFEEKHRHYFDFQRRSGQLPVQKEGEEVDYRGVLHRDGSVLMSVSL 396
           NLG +A+ +QQG APFEEKHRHYFDFQRR+G LPVQKEGEEVDYR VLHRDGSVLMS+SL
Sbjct: 361 NLGTKAAKLQQG-APFEEKHRHYFDFQRRTGDLPVQKEGEEVDYRNVLHRDGSVLMSISL 419

Query: 397 DQLKAPELLYKSLAAKLVVGMPLR 420
           DQLKAPELLY+SLA KLVVGMP +
Sbjct: 420 DQLKAPELLYRSLATKLVVGMPFK 443