Jatropha Genome Database

JcCA0131361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0131361.10 - phase: 2 /TE/pseudo/partial
         (557 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G42170.1 | Symbols:  | DNA binding | chr3:14321838-14323928 F...    56   6e-08
AT1G18560.1 | Symbols:  | DNA binding / protein dimerization | c...    55   2e-07

>AT3G42170.1 | Symbols:  | DNA binding | chr3:14321838-14323928
           FORWARD
          Length = 696

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 15/117 (12%)

Query: 437 VLLQRQKRTRE---SSSISEFDNYL--TTSFEFS---DNYADA-------DFPILDWWSR 481
            L   Q  T E   +  +S+FD Y+  TT        D Y D        +F +LDWW +
Sbjct: 557 ALPSPQNTTSEGGKADGLSDFDTYIMETTGQNLKSELDQYLDETLLPRVQEFDVLDWWKQ 616

Query: 482 HANTFPILSLLAKQILAAPVSTVAVEQAFSQGGNILDKTRSRMTPDSLEAQACVDDW 538
           +   +P LS +A+ IL+ PVS  A +  F      +D+ ++ + P+++EA  C  +W
Sbjct: 617 NKLKYPTLSKMARDILSIPVSAAAFDYVFDMEPREMDEYKTSLRPETVEALICAREW 673


>AT1G18560.1 | Symbols:  | DNA binding / protein dimerization |
           chr1:6385614-6388005 FORWARD
          Length = 690

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 6/124 (4%)

Query: 421 PQFSTQRVSGVDVAQQVLLQRQKRTRESSSISEFDNYLTTSFEFSDNYADADFPILDWWS 480
           PQ   +    +  A+++  ++++ +  ++ + E   YL+ S             +LDWW 
Sbjct: 537 PQEVDEGGGNISFAEEIARRKRRGSMSNNVVDELTQYLSESI------VPMQTDVLDWWK 590

Query: 481 RHANTFPILSLLAKQILAAPVSTVAVEQAFSQGGNILDKTRSRMTPDSLEAQACVDDWTK 540
            ++  +P LS +A+  LA   ++ A E+ F   G  +DK +  M  DS ++  C+  W +
Sbjct: 591 VNSGRYPRLSNMARDFLAVQATSAAPEEIFCGKGEEIDKQKYCMPHDSTQSVICIRSWIE 650

Query: 541 AELR 544
           A ++
Sbjct: 651 AGMK 654