Jatropha Genome Database

JcCA0128511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0128511.10 + phase: 0 /partial
         (156 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15110.1 | Symbols:  | phosphatidyl serine synthase family pr...   239   4e-64
AT1G15110.2 | Symbols:  | phosphatidyl serine synthase family pr...   198   1e-51

>AT1G15110.1 | Symbols:  | phosphatidyl serine synthase family
           protein | chr1:5199594-5201908 FORWARD
          Length = 425

 Score =  239 bits (611), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 113/156 (72%), Positives = 128/156 (82%)

Query: 1   VKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLSLCIVFLTVELNTFFLKFCLWVPPRNPVI 60
           VKRTLGQFTPA WDKDEWHPL GPWRFIQVL+LCI+FLTVELNTFFLKF LW+PPRNPVI
Sbjct: 270 VKRTLGQFTPAHWDKDEWHPLQGPWRFIQVLTLCIIFLTVELNTFFLKFSLWIPPRNPVI 329

Query: 61  VYRLILWWLIAIPTIREYNSYLQDRKPVKKVGAFCWLSLAXXXXXXXXXXKFGHGLYPNP 120
           +YRLILWWLIAIPT REYNSYLQDRKPVKKVGAFCWLSL           KFG GLYP  
Sbjct: 330 LYRLILWWLIAIPTTREYNSYLQDRKPVKKVGAFCWLSLGICIVELLICIKFGSGLYPTE 389

Query: 121 MPVWLVIFWASIGVALLTFLAIWSWQLHRRLGRKRQ 156
           MP+W+V  W S+G+ L+ FL  W+W++ + L +KR+
Sbjct: 390 MPLWVVTLWGSVGLGLVAFLLSWTWKIQKILAQKRR 425


>AT1G15110.2 | Symbols:  | phosphatidyl serine synthase family
           protein | chr1:5199594-5201988 FORWARD
          Length = 453

 Score =  198 bits (504), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 97/120 (80%), Positives = 102/120 (85%), Gaps = 1/120 (0%)

Query: 1   VKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLSLCIVFLTVELNTFFLKFCLWVPPRNPVI 60
           VKRTLGQFTPA WDKDEWHPL GPWRFIQVL+LCI+FLTVELNTFFLKF LW+PPRNPVI
Sbjct: 270 VKRTLGQFTPAHWDKDEWHPLQGPWRFIQVLTLCIIFLTVELNTFFLKFSLWIPPRNPVI 329

Query: 61  VYRLILWWLIAIPTIREYNSYLQDRKPVKKVGAFCWLSLAXXXXXXXXXXKFGHG-LYPN 119
           +YRLILWWLIAIPT REYNSYLQDRKPVKKVGAFCWLSL           KFG G + PN
Sbjct: 330 LYRLILWWLIAIPTTREYNSYLQDRKPVKKVGAFCWLSLGICIVELLICIKFGSGRIVPN 389