Jatropha Genome Database
- JcCA0128181.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0128181.20 + phase: 0 /partial
(469 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G21040.1 | Symbols: FBX2 | FBX2 (F-BOX PROTEIN 2) | chr5:7145... 595 e-170
AT5G51980.1 | Symbols: | WD-40 repeat family protein / zfwd2 pr... 60 3e-09
AT5G51980.2 | Symbols: | WD-40 repeat family protein / zfwd2 pr... 60 3e-09
AT4G25440.1 | Symbols: ZFWD1 | ZFWD1 (zinc finger WD40 repeat pr... 60 4e-09
AT2G47410.1 | Symbols: | nucleotide binding | chr2:19449133-194... 59 6e-09
AT1G47610.1 | Symbols: | transducin family protein / WD-40 repe... 57 2e-08
AT1G24530.1 | Symbols: | transducin family protein / WD-40 repe... 55 1e-07
AT4G34380.1 | Symbols: | transducin family protein / WD-40 repe... 54 2e-07
AT3G51930.1 | Symbols: | transducin family protein / WD-40 repe... 54 2e-07
AT5G49200.1 | Symbols: | WD-40 repeat family protein / zfwd4 pr... 54 3e-07
AT3G49660.1 | Symbols: | transducin family protein / WD-40 repe... 54 3e-07
AT4G02730.1 | Symbols: | transducin family protein / WD-40 repe... 52 6e-07
AT1G03060.1 | Symbols: | WD-40 repeat family protein / beige-re... 52 8e-07
AT3G18950.1 | Symbols: | transducin family protein / WD-40 repe... 52 9e-07
AT5G49430.1 | Symbols: | transducin family protein / WD-40 repe... 51 1e-06
AT4G02660.1 | Symbols: | WD-40 repeat family protein / beige-re... 51 2e-06
AT1G49040.1 | Symbols: SCD1 | SCD1 (STOMATAL CYTOKINESIS-DEFECTI... 51 2e-06
AT5G52820.1 | Symbols: | WD-40 repeat family protein / notchles... 50 2e-06
AT1G24130.1 | Symbols: | transducin family protein / WD-40 repe... 50 3e-06
AT1G49450.1 | Symbols: | transducin family protein / WD-40 repe... 50 4e-06
AT5G40880.1 | Symbols: | WD-40 repeat family protein / zfwd3 pr... 49 7e-06
AT1G21651.1 | Symbols: | protein binding / zinc ion binding | c... 49 8e-06
>AT5G21040.1 | Symbols: FBX2 | FBX2 (F-BOX PROTEIN 2) |
chr5:7145058-7146677 REVERSE
Length = 539
Score = 595 bits (1533), Expect = e-170, Method: Compositional matrix adjust.
Identities = 297/477 (62%), Positives = 351/477 (73%), Gaps = 17/477 (3%)
Query: 1 MAFECQGNTEVSEQYNCEXXXXXXXX------XXXXPTFD--CHPKERVSIIDSSKQLPC 52
M FECQ E + E P C K+ + SKQL
Sbjct: 1 MEFECQERLEAANDQRSESGLLNTDLRIGNDGSVEIPNVKLCCQKKKGTLVPSGSKQLLS 60
Query: 53 NEILPNCRRSITDLPPALISEILDCLDPKELGIVSCVSKVLNRLASENQVWKEVYCERWX 112
++ L +I DLP ALISEIL+CLDPKELG+VSCVS L+RLASE+ WKE Y ERW
Sbjct: 61 DKDLST---TIIDLPQALISEILNCLDPKELGLVSCVSTYLHRLASEHHAWKEFYRERWG 117
Query: 113 XXXXXXXXXXXXSDEKSWKELFVEREFRSRTFLGRYSIDVLYGHTEAVRTVFLLASAKLI 172
SDE+SWK+LFVEREFRSRTFLGRYSID LYGHTEAVRTVFLLASAKL+
Sbjct: 118 LPVVFGAASSGLSDERSWKDLFVEREFRSRTFLGRYSIDTLYGHTEAVRTVFLLASAKLV 177
Query: 173 FTSGYDTVVRMWDMEDGLSIASSRPLGCTIRAVAADTKLLVAGGTDGFIQGWRVVEGLPC 232
FTSGYD++VRMWDME+GLSIA+S+PLGCTIRA+AADTKLLVAGGTDGFI W+ ++GL
Sbjct: 178 FTSGYDSIVRMWDMEEGLSIAASKPLGCTIRALAADTKLLVAGGTDGFIHCWKSLDGLRN 237
Query: 233 LFNLKGSEEPNIEFRIWEHEGPITSLALDLMRIYSGSWDMTVRVWDRSSLKCLKVLRHND 292
LF+L G ++ EFR+W HEGPITSLALD+ I+SGSWDM+VR+WDRSS+KC+K LRH+D
Sbjct: 238 LFDLTGFQKEKTEFRLWGHEGPITSLALDMTSIFSGSWDMSVRIWDRSSMKCVKTLRHSD 297
Query: 293 WVWSLTPHDTTVATTSGSDVYVWDTHSGNLLTVINHAHVGNTYSLARSHTGDFLFTGGED 352
WVW L PH+TT+A+TSGSDVY+WD S L +I AH G TYSLARSHTGDFLFTGGED
Sbjct: 298 WVWGLAPHETTLASTSGSDVYIWDVSSETPLAIIPDAHEGTTYSLARSHTGDFLFTGGED 357
Query: 353 GAIHMFEIIRHSHTAYDFKVATWVPHSGAVHSVAFEFPWLVSASSDGKLSLIDVRKLLRT 412
G I MFEI R+ ++ W+PH+ V+S++FEFPWLVSAS DGKL+LIDVRKLL+T
Sbjct: 358 GGIKMFEIRRYGSETSVVLISQWMPHTSPVYSLSFEFPWLVSASGDGKLALIDVRKLLKT 417
Query: 413 SRRSLGKSVSRVKNVDCSSVEPPQRMLHGFGPNLFSVDIGADRIVCGGEEGVVRMWN 469
+R + K +S S+VEPPQRMLHGFG NLFSVD+G DRIVCGGEEG VR+WN
Sbjct: 418 NRCAYSKRIS------SSTVEPPQRMLHGFGSNLFSVDVGYDRIVCGGEEGTVRIWN 468
>AT5G51980.1 | Symbols: | WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative | chr5:21113650-21115902
REVERSE
Length = 437
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 16/191 (8%)
Query: 176 GYDTVVRMWDMEDGLSIASSRPLGCTIRAVAADTKLLVAGGTDGFIQGWRVVEGLPCLFN 235
G +V+ W++E + S P+G + ++ T LL AG DG I WR C
Sbjct: 208 GMPNLVKAWNIETNADQSLSGPVG-QVYSLVVGTDLLFAGTQDGSILAWRYNAATNCF-- 264
Query: 236 LKGSEEPNIEFRIWEHEGPITSLALDLMRIYSGSWDMTVRVWDRSSLKCLKVLR-HNDWV 294
EP+ H + +L + R+YSGS D T++VW +L+C++ L H+ V
Sbjct: 265 -----EPSASLT--GHTLAVVTLYVGANRLYSGSMDKTIKVWSLDNLQCIQTLTDHSSVV 317
Query: 295 WSLTPHDTTVATTS-GSDVYVWDT-HSGNLLTVINHAHVGNTYSLARSHTGD---FLFTG 349
SL D + + S + V +W GNL H +L H + L
Sbjct: 318 MSLICWDQFLLSCSLDNTVKIWAAIEGGNLEVTYTHKEEHGVLALCGVHDAEAKPVLLCA 377
Query: 350 GEDGAIHMFEI 360
D + ++++
Sbjct: 378 CNDNTLRLYDL 388
>AT5G51980.2 | Symbols: | WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative | chr5:21113650-21115902
REVERSE
Length = 443
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 16/191 (8%)
Query: 176 GYDTVVRMWDMEDGLSIASSRPLGCTIRAVAADTKLLVAGGTDGFIQGWRVVEGLPCLFN 235
G +V+ W++E + S P+G + ++ T LL AG DG I WR C
Sbjct: 208 GMPNLVKAWNIETNADQSLSGPVG-QVYSLVVGTDLLFAGTQDGSILAWRYNAATNCF-- 264
Query: 236 LKGSEEPNIEFRIWEHEGPITSLALDLMRIYSGSWDMTVRVWDRSSLKCLKVLR-HNDWV 294
EP+ H + +L + R+YSGS D T++VW +L+C++ L H+ V
Sbjct: 265 -----EPSASLT--GHTLAVVTLYVGANRLYSGSMDKTIKVWSLDNLQCIQTLTDHSSVV 317
Query: 295 WSLTPHDTTVATTS-GSDVYVWDT-HSGNLLTVINHAHVGNTYSLARSHTGD---FLFTG 349
SL D + + S + V +W GNL H +L H + L
Sbjct: 318 MSLICWDQFLLSCSLDNTVKIWAAIEGGNLEVTYTHKEEHGVLALCGVHDAEAKPVLLCA 377
Query: 350 GEDGAIHMFEI 360
D + ++++
Sbjct: 378 CNDNTLRLYDL 388
>AT4G25440.1 | Symbols: ZFWD1 | ZFWD1 (zinc finger WD40 repeat
protein 1); nucleic acid binding / zinc ion binding |
chr4:13007107-13009381 REVERSE
Length = 430
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 16/191 (8%)
Query: 176 GYDTVVRMWDMEDGLSIASSRPLGCTIRAVAADTKLLVAGGTDGFIQGWRVVEGLPCLFN 235
G +V+ W++++ ++ + P+G + ++ T LL AG DG I WR C
Sbjct: 201 GMPNLVKAWNIQNNADLSLNGPVG-QVYSLVVGTDLLFAGTQDGSILVWRYNSTTSCF-- 257
Query: 236 LKGSEEPNIEFRIWEHEGPITSLALDLMRIYSGSWDMTVRVWDRSSLKCLKVL-RHNDWV 294
+ + H + SL + R+YSG+ D +++VW +L+C++ L H V
Sbjct: 258 -------DPAASLLGHTLAVVSLYVGANRLYSGAMDNSIKVWSLDNLQCIQTLTEHTSVV 310
Query: 295 WSLTPHDTTVATTS-GSDVYVW-DTHSGNLLTVINHAHVGNTYSLARSHTGD---FLFTG 349
SL D + + S + V +W T GNL H +L H + L
Sbjct: 311 MSLICWDQFLLSCSLDNTVKIWAATEGGNLEVTYTHKEEYGVLALCGVHDAEAKPVLLCS 370
Query: 350 GEDGAIHMFEI 360
D ++H++++
Sbjct: 371 CNDNSLHLYDL 381
>AT2G47410.1 | Symbols: | nucleotide binding |
chr2:19449133-19456991 FORWARD
Length = 1520
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 32/172 (18%)
Query: 149 SIDVLYGHTEAVRTVFLLASAKLIFTSGYDTVVRMWDMEDGLSIASSRPLGCTIR--AVA 206
+I L GH AV S + + T D +V++W ME L +AS R I AV+
Sbjct: 228 NIKKLRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETALCLASCRGHEGDITDLAVS 287
Query: 207 ADTKLLVAGGTDGFIQGWRVVEGLPCLFNLKGSEEPNIEFRIWEHEGPITSLAL-----D 261
++ L+ + D I+ WR+ +G+P L+G H G +T++A
Sbjct: 288 SNNALVASASNDFVIRVWRLPDGMPISV-LRG------------HTGAVTAIAFSPRQAS 334
Query: 262 LMRIYSGSWDMTVRVWDRSSLKCLKVLRHNDW---VWSLTPHDTTVATTSGS 310
+ ++ S S D T R+WD R++ W ++ +P D +TS +
Sbjct: 335 VYQLLSSSDDGTCRIWD---------ARYSQWLPRIYVPSPSDANTGSTSNA 377
>AT1G47610.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr1:17504836-17505891 FORWARD
Length = 351
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 119/271 (43%), Gaps = 46/271 (16%)
Query: 165 LLASAKLIFTSGYDTVVRMWDMEDGLSIASSRPLGCTIRAVAADTKLLVAGGTDGFIQGW 224
L A+ L++T + +R+W + S S G V + + G DG I+ W
Sbjct: 30 LAATNDLLYTGSDNNYIRVWKNLNEFSGFKSNS-GLVKAIVISREAKVFTGHQDGKIRVW 88
Query: 225 RVVEGLPCLFN-----------LKGSEEPN--IEFR-----IW-EHEGPIT--SLALDLM 263
+ P ++ LK S +P+ +E R +W +H ++ SLA D
Sbjct: 89 KTSSKNPRVYTRAGSLPALKDVLKSSVKPSNYVEVRRCRTALWIKHSDAVSCLSLAEDQG 148
Query: 264 RIYSGSWDMTVRVWDRSSLKCLKVLR-HNDWVWSLTPHDTTVATTSG-SDVYVWDTH--- 318
+YS SWD TV+VW LKC++ ++ H+D V S+T ++ V T S V VW
Sbjct: 149 LLYSASWDRTVKVWRIHDLKCIESIKAHDDAVNSVTTAESLVFTGSADGTVKVWKREIRG 208
Query: 319 ---SGNLLTVINHAHVGNTYSLARSHTGDFLFTGGEDGAIHMFE-----IIRHSHTAYDF 370
+ +L + T +L SH +++G DGA++ +E +++H F
Sbjct: 209 KRTAHSLFQTLLKQESAVT-ALVTSHMA--VYSGSSDGAVNFWEMGDKKLLKHCEV---F 262
Query: 371 KVATWVPHSGAVHSVAFEFPWLVSASSDGKL 401
K H AV +A L S ++D K+
Sbjct: 263 K-----KHRLAVLCIAAAGKLLFSGAADKKI 288
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 156 HTEAVRTVFLLASAKLIFTSGYDTVVRMWDMEDGLSIASSRPLGCTIRAVAADTKLLVAG 215
H++AV + L L++++ +D V++W + D I S + + +V L+ G
Sbjct: 134 HSDAVSCLSLAEDQGLLYSASWDRTVKVWRIHDLKCIESIKAHDDAVNSVTTAESLVFTG 193
Query: 216 GTDGFIQGWRVVEGLPCLFNLKGSEEPNIEFR-IWEHEGPITSLALDLMRIYSGSWDMTV 274
DG ++ W+ ++G + F+ + + E +T+L M +YSGS D V
Sbjct: 194 SADGTVKVWK--------REIRGKRTAHSLFQTLLKQESAVTALVTSHMAVYSGSSDGAV 245
Query: 275 RVWDRSSLKCLK 286
W+ K LK
Sbjct: 246 NFWEMGDKKLLK 257
>AT1G24530.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr1:8693287-8694543 FORWARD
Length = 418
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 109/252 (43%), Gaps = 26/252 (10%)
Query: 171 LIFTSGYDTVVRMWDMEDGLSIASSR-PLGCTIRAVAADTKLLVAGGTDGFI-------- 221
L SG++ + DM L + + P T+++V + + DG I
Sbjct: 96 LFAVSGHEVSIYDRDMCAHLDTFNGQDPFSGTVKSVGFSGEKIFTAHQDGKIGVWKLTAK 155
Query: 222 QGWRVVEGLPCL------FNLKGS--EEPNIEFRIW-EHEGPITSLALDLMRIYSGSWDM 272
G++ + LP L F L + + + R+W EH +T+LA+ IYS SWD
Sbjct: 156 SGYKQLTTLPTLNDRLRRFALPKNYVQVRRHKKRLWIEHADAVTALAVSDGFIYSVSWDK 215
Query: 273 TVRVWDRSSLKCLKVLR-HNDWVWSLTPHDTTVATTSGSD--VYVWDTHSG---NLLTVI 326
T+++W S L+C + ++ H+D V ++ T +D + VW +G + L
Sbjct: 216 TLKIWRASDLRCKESIKAHDDAVNAIAVSTNGTVYTGSADRRIRVWAKPTGEKRHTLVAT 275
Query: 327 NHAHVGNTYSLARSHTGDFLFTGGEDGAIHMFEIIRHSHTAYDFKVATWVPHSGAVHSVA 386
H +LA + G LF+G D +I ++E R + Y H A+ S+
Sbjct: 276 LEKHKSAVNALALNDDGSVLFSGSCDRSILVWE--REDTSNYMAVRGALRGHDKAILSLF 333
Query: 387 FEFPWLVSASSD 398
L+S S+D
Sbjct: 334 NVSDLLLSGSAD 345
>AT4G34380.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr4:16438835-16440322 FORWARD
Length = 495
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 113/267 (42%), Gaps = 38/267 (14%)
Query: 165 LLASAKLIFTSGYDTVVRMW-DMEDGLSIASSRPLGCTIRAVAADTKLLVAGGTDGFIQG 223
L AS L++T +R+W ++++ SS L I+A+ + G DG I+
Sbjct: 131 LAASGDLLYTGSDSKNIRVWKNLKEHAGFKSSSGL---IKAIVIFGDRIFTGHQDGKIRI 187
Query: 224 WRV----------VEGLPCLFNL-KGSEEPN--IEFR------IWEHEGPITSLALD--L 262
W+V V LP ++ K S P +E R +H ++SL+LD L
Sbjct: 188 WKVSKRKPGKHKRVGTLPTFKSMVKSSVNPKHFMEVRRNRNSVKTKHNDAVSSLSLDVEL 247
Query: 263 MRIYSGSWDMTVRVWDRSSLKCLKVLR-HNDWVWSLTPHDTTVATTSGSD--VYVWDTH- 318
+YS SWD T++VW + KCL+ + H+D + S+ + T +D V VW
Sbjct: 248 GLLYSSSWDTTIKVWRIADSKCLESIHAHDDAINSVMSGFDDLVFTGSADGTVKVWKREL 307
Query: 319 ----SGNLLTVINHAHVGNTYSLARSHTGDFLFTGGEDGAIHMFEIIRHSHTAYDFKVAT 374
+ + L + +LA ++ G DG ++ +E + S T K
Sbjct: 308 QGKGTKHTLAQVLLKQENAVTALAVKSQSSIVYCGSSDGLVNYWERSKRSFTGGILK--- 364
Query: 375 WVPHSGAVHSVAFEFPWLVSASSDGKL 401
H AV + L+S S+D +
Sbjct: 365 --GHKSAVLCLGIAGNLLLSGSADKNI 389
>AT3G51930.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr3:19271672-19272919 FORWARD
Length = 415
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 24/188 (12%)
Query: 150 IDVLYGHTEAVRTVFLLASAKLIFTSGYDTVVRMWDMEDGLSIASSRPLGCTIRAVAADT 209
+ VL H +V ++ L L + G D +V W D A +++A+ +
Sbjct: 54 LAVLSAHVGSVSSLALCGEFLLSASQGKDIIV--WQQPDLKIFAKFGQGDGSVKALVSVG 111
Query: 210 KLLVAGGTDGFIQGW-----------RVVEGLPCLFNLKGSEEPNIEF--------RIW- 249
+ D I+ W R+V+ LP + G + R+W
Sbjct: 112 SKVFTAHQDSRIRVWKVSRRNSENAFRLVDTLPTTKDYLGKFMKQSNYVQTRRNHKRLWI 171
Query: 250 EHEGPITSLALDLMRIYSGSWDMTVRVWDRSSLKCLKVLR-HNDWVWSLTPHDTTVATTS 308
EH I+ LA+ IYSGSWD T++VW S LKCL+ ++ H+D + L D V + S
Sbjct: 172 EHADSISCLAVHAGIIYSGSWDKTLKVWRLSDLKCLESIKAHDDAINGLVAGDGRVYSAS 231
Query: 309 G-SDVYVW 315
V +W
Sbjct: 232 ADGKVKIW 239
>AT5G49200.1 | Symbols: | WD-40 repeat family protein / zfwd4
protein (ZFWD4) | chr5:19947796-19949055 REVERSE
Length = 419
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 105/256 (41%), Gaps = 39/256 (15%)
Query: 144 FLGRYSIDVLYGHTEAVRTVFLLASAKLIFTSGYDTVVRMWDMEDGL------------S 191
F G + L GH + ++ + L + +F+ D +R+WD G S
Sbjct: 118 FPGLAMVASLEGHNKELKGIALPEGSDKLFSVSIDGTLRVWDCNSGQCVHSINLDAEAGS 177
Query: 192 IASSRP-----LGCTIRAVAADTKL---LVAGGTDGFIQGWRVVEGLPCLFNLKGS---- 239
+ S P L I+A T L A G G + + G+ GS
Sbjct: 178 LISEGPWVFLGLPNAIKAFNVQTSQDLHLQAAGVVGQVNAMTIANGMLFAGTSSGSILVW 237
Query: 240 ----EEPNIEFR----IWEHEGPITSLALDLMRIYSGSWDMTVRVWDRSSLKCLKVLR-H 290
+ + F+ + H G +T A+ +YSGS D T+++WD ++L+C+ L+ H
Sbjct: 238 KATTDSESDPFKYLTSLEGHSGEVTCFAVGGQMLYSGSVDKTIKMWDLNTLQCIMTLKQH 297
Query: 291 NDWVWSLTPHDTTVATTS-GSDVYVWDTHSGNLLTVIN--HAHVGNTYSLARSHTGD--- 344
V SL D + ++S + VW +L V+ + ++L+ H +
Sbjct: 298 TGTVTSLLCWDKCLISSSLDGTIKVWAYSENGILKVVQTRRQEQSSVHALSGMHDAEAKP 357
Query: 345 FLFTGGEDGAIHMFEI 360
+F ++G + +F++
Sbjct: 358 IIFCSYQNGTVGIFDL 373
>AT3G49660.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr3:18413690-18415223 FORWARD
Length = 317
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 88/217 (40%), Gaps = 20/217 (9%)
Query: 150 IDVLYGHTEAVRTVFLLASAKLIFTSGYDTVVRMWDMEDG--LSIASSRPLGCTIRAVAA 207
I L GHT V + +I + +D VR+WD+ G L + + T
Sbjct: 106 IKTLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNR 165
Query: 208 DTKLLVAGGTDGFIQGWRVVEGLPCLFNLKGSEEPNIEFRIWEHEGPITSLALDLMRIYS 267
D L+V+ DG + W G C+ L E P + F + G I
Sbjct: 166 DGSLIVSSSYDGLCRIWDSGTG-HCVKTLIDDENPPVSFVRFSPNGKF---------ILV 215
Query: 268 GSWDMTVRVWDRSSLKCLKVLRHN-------DWVWSLTPHDTTVATTSGSDVYVWDTHSG 320
G+ D T+R+W+ SS K LK + +S+T V+ + + V++W+ +S
Sbjct: 216 GTLDNTLRLWNISSAKFLKTYTGHVNAQYCISSAFSVTNGKRIVSGSEDNCVHMWELNSK 275
Query: 321 NLLTVINHAHVGNTYSLARSHTGDFLFTGGEDGAIHM 357
LL + H ++A T + + +G D + +
Sbjct: 276 KLLQKL-EGHTETVMNVACHPTENLIASGSLDKTVRI 311
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 140/301 (46%), Gaps = 43/301 (14%)
Query: 153 LYGHTEAVRTVFLLASAKLIFTSGYDTVVRMWDMEDGLSIASSRPL--------GCTIRA 204
L H AV +V + +L+ ++ D +R + + + ++ + P+ G + A
Sbjct: 20 LTSHNRAVSSVKFSSDGRLLASASADKTIRTYTI-NTINDPIAEPVQEFTGHENGISDVA 78
Query: 205 VAADTKLLVAGGTDGFIQGWRVVEGLPCLFNLKGSEEPNIEFRIWEHEGPITSLALDLMR 264
++D + +V+ D ++ W V G + L G N F + + P +++
Sbjct: 79 FSSDARFIVSASDDKTLKLWDVETG-SLIKTLIG--HTNYAFCV--NFNPQSNM------ 127
Query: 265 IYSGSWDMTVRVWDRSSLKCLKVL-RHNDWVWSLT-PHDTTVATTSGSD--VYVWDTHSG 320
I SGS+D TVR+WD ++ KCLKVL H+D V ++ D ++ +S D +WD+ +G
Sbjct: 128 IVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTG 187
Query: 321 NLL-TVINHAHVGNTYSLARSHTGDFLFTGGEDGAIHMFEIIRHSHTAYDFKVATWVPHS 379
+ + T+I+ + ++ + S G F+ G D + ++ I ++ F + T+ H
Sbjct: 188 HCVKTLIDDENPPVSF-VRFSPNGKFILVGTLDNTLRLWNI-----SSAKF-LKTYTGHV 240
Query: 380 GAVHSVAFEF-----PWLVSASSDGKLSL--IDVRKLLRTSRRSLGKSVSRVKNVDCSSV 432
A + ++ F +VS S D + + ++ +KLL + L V NV C
Sbjct: 241 NAQYCISSAFSVTNGKRIVSGSEDNCVHMWELNSKKLL----QKLEGHTETVMNVACHPT 296
Query: 433 E 433
E
Sbjct: 297 E 297
>AT4G02730.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr4:1207759-1209066 FORWARD
Length = 333
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 19/183 (10%)
Query: 150 IDVLYGHTEAVRTVFLLASAKLIFTSGYDTVVRMWDMEDGLSIASSRPLGCTIRAV--AA 207
+ VL GHT V V + LI + +D +R+W+++ G + + I +V
Sbjct: 121 LKVLRGHTNFVFCVNFNPPSNLIVSGSFDETIRIWEVKTGKCVRMIKAHSMPISSVHFNR 180
Query: 208 DTKLLVAGGTDGFIQGWRVVEGLPCLFNLKGSEEPNIEFRIWEHEGPITSLALDLMRIYS 267
D L+V+ DG + W EG CL L + P + F + G I
Sbjct: 181 DGSLIVSASHDGSCKIWDAKEG-TCLKTLIDDKSPAVSFAKFSPNGKF---------ILV 230
Query: 268 GSWDMTVRVWDRSSLKCLKVLR-HNDWV------WSLTPHDTTVATTSGSDVYVWDTHSG 320
+ D T+++ + ++ K LKV H + V +S+T V+ + + VY+WD +
Sbjct: 231 ATLDSTLKLSNYATGKFLKVYTGHTNKVFCITSAFSVTNGKYIVSGSEDNCVYLWDLQAR 290
Query: 321 NLL 323
N+L
Sbjct: 291 NIL 293
>AT1G03060.1 | Symbols: | WD-40 repeat family protein / beige-related
| chr1:712971-726891 REVERSE
Length = 3601
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 22/172 (12%)
Query: 204 AVAADTKLLVAGGTDGFIQGWRVVEGLPCLFNLKGSEEPNIEFRIWEHEGPITSLALD-- 261
V+ D +++V G DG + WRV + P +GS +E + H +T L +
Sbjct: 3337 GVSHDGRIVVTGAEDGLVCVWRVSKDGP-----RGSRRLRLEKALCAHTAKVTCLRVSQP 3391
Query: 262 LMRIYSGSWDMTVRVWDRSSLKCLKVLRHNDW---VWSLTPHDTT--VATTSGSDVYVWD 316
M I SGS D TV +WD SSL ++ L D+ + ++ +D T + T +G+ + VW
Sbjct: 3392 YMMIASGSDDCTVIIWDLSSLSFVRQL--PDFPVPISAIYINDLTGEIVTAAGTVLAVWS 3449
Query: 317 THSGNLLTVINHAHV--GNTYSLARSHTGDFL-----FTGGEDGAIHMFEII 361
+ G+ L V N + + + S+ S + D+L TG + GA+ ++ +I
Sbjct: 3450 IN-GDCLAVANTSQLPSDSVLSVTGSTSSDWLETSWYVTGHQSGAVKVWRMI 3500
>AT3G18950.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr3:6536900-6538321 FORWARD
Length = 473
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 105/271 (38%), Gaps = 68/271 (25%)
Query: 165 LLASAKLIFTSGYDTVVRMW-DMEDGLSIASSRPLGCTIRAVAADTKLLVAGGTDGFIQG 223
L AS L+FT +R+W D++D S+ L I + D ++ G DG I+
Sbjct: 144 LAASGDLLFTGSDSKNIRVWKDLKDHTGFKSTSGLVKAI-VITGDNRIFT-GHQDGKIRV 201
Query: 224 WR----------VVEGLPCL--FNLKGSEEPN-IEFRIWE------HEGPITSLALD--L 262
WR + LP L F K N +E R + H ++ L+L+ L
Sbjct: 202 WRGSKRRTGGYSRIGSLPTLKEFLTKSVNPKNYVEVRRRKNVLKIRHYDAVSCLSLNEEL 261
Query: 263 MRIYSGSWDMTVRVWDRSSLKCLKVLRHNDWVWSLTPHDTTVAT-TSGSDVYVWDTHSGN 321
+YSGSWD T++VW S KCL+ S+ HD + T +G D
Sbjct: 262 GLLYSGSWDKTLKVWRLSDSKCLE---------SIQAHDDAINTVAAGFD---------- 302
Query: 322 LLTVINHAHVGNTYSLARSHTGDFLFTGGEDGAIHMFEIIRHSHTAYDFKVATWVPHSGA 381
D LFTG DG + +++ F V + A
Sbjct: 303 ----------------------DLLFTGSADGTLKVWKRELQGKGTKHFLVNVLMKQENA 340
Query: 382 VHSVAFEFPWLV--SASSDGKLSLIDVRKLL 410
V ++A V SSDG ++ + +K L
Sbjct: 341 VTALAVNITAAVVYCGSSDGTVNFWEGQKYL 371
>AT5G49430.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr5:20037338-20045454 REVERSE
Length = 1677
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 20/137 (14%)
Query: 149 SIDVLYGHTEAVRTVFLLASAKLIFTSGYDTVVRMWDMEDGLSIASSRPLGCTIR--AVA 206
+I L GH AV L S + + T D +V++W M+ +AS R I AV+
Sbjct: 237 NIKRLRGHRNAVYCAILDRSGRYVITGSDDRLVKVWSMDTAYCLASCRGHEGDITDLAVS 296
Query: 207 ADTKLLVAGGTDGFIQGWRVVEGLPCLFNLKGSEEPNIEFRIWEHEGPITSLAL-----D 261
++ + + D I+ WR+ +GLP L+G H G +T++A
Sbjct: 297 SNNIFIASASNDCVIRVWRLPDGLPVSV-LRG------------HTGAVTAIAFSPRPGS 343
Query: 262 LMRIYSGSWDMTVRVWD 278
++ S S D T R+WD
Sbjct: 344 PYQLLSSSDDGTCRIWD 360
>AT4G02660.1 | Symbols: | WD-40 repeat family protein / beige-related
| chr4:1159667-1173791 REVERSE
Length = 3471
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 20/192 (10%)
Query: 184 WDMEDGLSIASSRPLGCTIR--AVAADTKLLVAGGTDGFIQGWRVVEGLPCLFNLKGSEE 241
+D + LS + G I+ V+ D +++V G DG + WRV + P +GS
Sbjct: 3259 YDQDKLLSTHENLHEGNQIQCAGVSHDGRIVVTGAEDGLVSVWRVSKDGP-----RGSRR 3313
Query: 242 PNIEFRIWEHEGPITSLALD--LMRIYSGSWDMTVRVWDRSSLKCLKVLRHNDW-VWSLT 298
+E + H + L + M I S S D TV +WD SSL ++ L + V +
Sbjct: 3314 LRLEKSLCAHTAKVICLRVSQPYMMIASSSDDCTVIIWDLSSLSFVRQLPNFSVPVTVVY 3373
Query: 299 PHDTT--VATTSGSDVYVWDTHSGNLLTVINHAHVGN--TYSLARSHTGDFL-----FTG 349
+D T + T +GS + VW + G+ L+V+N + + S+A S D+L TG
Sbjct: 3374 INDLTGEIVTAAGSVLAVWSIN-GDCLSVVNTSQLPTDLIVSVAGSTFSDWLETTWYVTG 3432
Query: 350 GEDGAIHMFEII 361
+ GA+ ++ ++
Sbjct: 3433 HQSGALKVWRMV 3444
>AT1G49040.1 | Symbols: SCD1 | SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE
1); protein binding | chr1:18139419-18148826 REVERSE
Length = 1187
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 111/272 (40%), Gaps = 35/272 (12%)
Query: 150 IDVLYGHTEAVRTVFLLASAKLIFTSGYDTVVRMWDMEDGLSIASSRPLGCTIRAVAAD- 208
++ L GH V V +L S + + T+ +D V+MWD+ + +A+ I ++ D
Sbjct: 932 LEELKGHDSQVSCVKML-SGERVLTAAHDGTVKMWDVRTDMCVATVGRCSSAILSLEYDD 990
Query: 209 -TKLLVAGGTDGFIQGWRVVEGLPCLFNLKGSEEPNIEFRIWEHEGPITSLALDLMRIYS 267
T +L A G D W + G + LKG H I S+ + + +
Sbjct: 991 STGILAAAGRDTVANIWDIRSG-KQMHKLKG------------HTKWIRSIRMVEDTLIT 1037
Query: 268 GSWDMTVRVWDRSSLKCLKVLR-HNDWVWSL--TPHDTTVATTSGSDVY-VWDTHSGNLL 323
GS D T RVW S C VL H V S+ +P D + T S + W+ G +
Sbjct: 1038 GSDDWTARVWSVSRGSCDAVLACHAGPVQSVEYSPFDKGIITGSADGLLRFWENDEGGIK 1097
Query: 324 TVIN-HAHVGNTYSLARSHTGDFLFTGGEDGAIHMFEIIRHSHTAYDFKVATW----VPH 378
V N H + S+ ++L G D ++ +F H + KV+ W VP
Sbjct: 1098 CVKNITLHSSSILSINAGE--NWLGIGAADNSMSLF----HRPSNAGTKVSGWQLYRVPQ 1151
Query: 379 SGA--VHSVA--FEFPWLVSASSDGKLSLIDV 406
A V VA E + S +G L L D
Sbjct: 1152 RTAAVVRCVASDLERKRICSGGRNGVLRLWDA 1183
>AT5G52820.1 | Symbols: | WD-40 repeat family protein / notchless
protein, putative | chr5:21401423-21404203 FORWARD
Length = 473
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 23/219 (10%)
Query: 147 RYSIDVLYGHTEAVRTVFLLASAKLIFTSGYDTVVRMWDMEDGLSIASSRPLGCTIRAVA 206
+ SI L GHT AV T +I+T D ++MW+ G I + G I ++A
Sbjct: 231 KKSIICLSGHTLAV-TCVKWGGDGIIYTGSQDCTIKMWETTQGKLIRELKGHGHWINSLA 289
Query: 207 ADTKLLVAGGTDGFIQGWRVVEGLPCLFNLKGSEEPNIEFRIWEHEGPITSLALDLMRIY 266
T+ ++ G F+ G + P E + E + R+
Sbjct: 290 LSTEYVLRTGA----------------FDHTGRQYPPNEEKQKALERYNKTKGDSPERLV 333
Query: 267 SGSWDMTVRVWDRSSLKCLK--VLRHNDWVWSL--TPHDTTVATTS-GSDVYVWDTHSGN 321
SGS D T+ +W+ S K K + H V + +P +A+ S V +W+ +G
Sbjct: 334 SGSDDFTMFLWEPSVSKQPKKRLTGHQQLVNHVYFSPDGKWIASASFDKSVRLWNGITGQ 393
Query: 322 LLTVINHAHVGNTYSLARSHTGDFLFTGGEDGAIHMFEI 360
+TV HVG Y ++ S L +G +D + ++EI
Sbjct: 394 FVTVFR-GHVGPVYQVSWSADSRLLLSGSKDSTLKIWEI 431
>AT1G24130.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr1:8534183-8535430 REVERSE
Length = 415
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 113/278 (40%), Gaps = 43/278 (15%)
Query: 165 LLASAKLIFTSGYDTVVRMWDME----------DGLSIASSRPLGCTIRAVAADTKLLVA 214
L S KL++T ++ +R+W E D ++ ++ G + D L++
Sbjct: 75 LAVSDKLLYTGSSNSEIRVWPREPPFSPEYSTGDDRNVVANGNGGVKSLVILGDK--LIS 132
Query: 215 GGTDGFIQGWRVVE-------------GLPCL---FNLKGSEEPNIEFR-----IWEHE- 252
D I+ W++++ LP + F S + +E R W H
Sbjct: 133 AHQDHKIRVWKIIDESNRRGQKYKCVATLPTMNDRFKTLFSSKSYVEVRRHKKCTWVHHV 192
Query: 253 GPITSLAL--DLMRIYSGSWDMTVRVWDRSSLKCLKVLR--HNDWVWSLTPHDTTVATTS 308
++SLAL D +YS SWD + ++W S KCL + H+D + ++ T
Sbjct: 193 DAVSSLALSQDGSLLYSASWDRSFKIWRTSDFKCLDSIEKAHDDAINAIVVSKDGFVYTG 252
Query: 309 GSD--VYVWDTH-SGNLLTVINHAHVGNTYSLARSHTGDFLFTGGEDGAIHMFE--IIRH 363
+D + VW+ + L H+ +LA S G L++G D +I ++E I
Sbjct: 253 SADKKIKVWNKKDKKHSLVATLTKHLSAVNALAISEDGKVLYSGACDRSILVWERLINGD 312
Query: 364 SHTAYDFKVATWVPHSGAVHSVAFEFPWLVSASSDGKL 401
+ V H A+ +A ++S S+D L
Sbjct: 313 DEELHMSVVGALRGHRKAIMCLAVASDLVLSGSADKSL 350
>AT1G49450.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr1:18305684-18307099 FORWARD
Length = 471
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 107/263 (40%), Gaps = 44/263 (16%)
Query: 165 LLASAKLIFTSGYDTVVRMW-DMEDGLSIASSRPLGCTIRAVAADTKLLVAGGTDGFIQG 223
L AS L+FT +R+W D++D S+ I V D ++ G DG I+
Sbjct: 140 LAASGDLLFTGSDSKNIRVWKDLKDFSGFKSTSGFVKAI-VVTRDNRVFT-GHQDGKIRV 197
Query: 224 WRVVEGLPCLFNLKGSEEPNIEF-------RIW------------EHEGPITSLAL--DL 262
WR + P ++ GS EF R + H ++ L+L DL
Sbjct: 198 WRGSKKNPEKYSRVGSLPTLKEFLTKSVNPRNYVEVRRRKNVLKIRHFDAVSCLSLNEDL 257
Query: 263 MRIYSGSWDMTVRVWDRSSLKCLKVLR-HNDWVWSLTPHDTTVATTSGSD--VYVWD--- 316
+YSGSWD T++VW S KCL+ + H+D V ++ + T +D + VW
Sbjct: 258 GLLYSGSWDKTLKVWRLSDSKCLESIEAHDDAVNTVVSGFDDLVFTGSADGTLKVWKREV 317
Query: 317 --THSGNLLTVINHAHVGNTYSLARSHTGDFLFTGGEDGAIHMFEIIRHSHTAYDFKVAT 374
++L + +LA + T ++ G DG ++ +E +
Sbjct: 318 QGKEMKHVLVQVLMKQENAVTALAVNLTDAVVYCGSSDGTVNFWERQK------------ 365
Query: 375 WVPHSGAVHSVAFEFPWLVSASS 397
++ H G +H L +A S
Sbjct: 366 YLTHKGTIHGHRMAVLCLATAGS 388
>AT5G40880.1 | Symbols: | WD-40 repeat family protein / zfwd3
protein (ZFWD3) | chr5:16379481-16381205 FORWARD
Length = 472
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 97/229 (42%), Gaps = 20/229 (8%)
Query: 158 EAVRTVFLLASAKLIFTSG------YDTVVRMWDMEDGLSIASSRPLGCTIRAVAADTKL 211
+ VR++ L A A + + G V+ +++++ + +G + A+ A +
Sbjct: 220 QCVRSINLQAEAGSLISEGPWVFLGLPNAVKAFNVQNSKDVHLEGVVG-QVHAMTAANGM 278
Query: 212 LVAGGTDGFIQGWRVVEGLPCLFNLKGSEEPNIEFRIWEHEGPITSLALDLMRIYSGSWD 271
L AG + G I W+ + F S E + H G +T + +YSGS D
Sbjct: 279 LFAGTSSGSILVWKATDSESDPFKYLTSLEGH-------HSGEVTCFVVGGEVLYSGSVD 331
Query: 272 MTVRVWDRSSLKCLKVLR-HNDWVWSLTPHDTTVATTS-GSDVYVWDTHSGNLLTVIN-H 328
T++VWD ++L+C L+ H V SL D + ++S + +W L V+
Sbjct: 332 KTIKVWDLNTLQCRMTLKQHIGTVTSLLCWDKCLISSSLDGTIKLWACSENESLKVVQTR 391
Query: 329 AHVGNTYSLARSHTGD---FLFTGGEDGAIHMFEIIRHSHTAYDFKVAT 374
+ ++L H + +F ++GA+ +F++ F T
Sbjct: 392 KQELSVHTLCGMHDAEAKPIMFCSYQNGAVGIFDLPSFEERGKMFSTQT 440
>AT1G21651.1 | Symbols: | protein binding / zinc ion binding |
chr1:7601061-7604152 REVERSE
Length = 811
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 24/153 (15%)
Query: 214 AGGTDGFIQGWRVVEGLPCLFNLKGSEEPNIEFRIWEHEGPITSLALDLMRIYSGSWDMT 273
G D I+ W + +G L + G H+ +++L + +YSGSWD T
Sbjct: 630 TGSGDNTIKAWSLQDG-SLLCTMSG------------HKSVVSTLVVVNGVLYSGSWDGT 676
Query: 274 VRVWDRSSLKCLKVLRHND-----WVWSLTPHDTT-VATTSGSDVYVWDTHSGNLLTVIN 327
VR+W S L VL + SL D T VA D+ +W T++
Sbjct: 677 VRLWSLSDNSLLTVLGEETPGIVRSILSLAADDQTLVAAYQNGDIQIWRDD-----TLMK 731
Query: 328 HAHVGNTYSLARSHTGDFLFTGGEDGAIHMFEI 360
+ N L+ + G +LFTGG D I++ E+
Sbjct: 732 SMKIQNGAILSIAVNGKWLFTGGWDKTINVQEL 764