Jatropha Genome Database

JcCA0128181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0128181.10 - phase: 0 /partial
         (269 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G21050.1 | Symbols:  | LOCATED IN: chloroplast; EXPRESSED IN:...   285   3e-77
AT5G64090.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   160   8e-40

>AT5G21050.1 | Symbols:  | LOCATED IN: chloroplast; EXPRESSED IN: 14
           plant structures; EXPRESSED DURING: 8 growth stages;
           CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619);
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT5G64090.1); Has 170 Blast hits to 170
           proteins in 49 species: Archae - 0; Bacteria - 0;
           Metazoa - 133; Fungi - 0; Plants - 30; Viruses - 0;
           Other Eukaryotes - 7 (source: NCBI BLink). |
           chr5:7147890-7148957 FORWARD
          Length = 355

 Score =  285 bits (728), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 146/205 (71%), Positives = 165/205 (80%), Gaps = 11/205 (5%)

Query: 43  SAKIQSAIQSLTSI---TKIPSTILSAQDPASSLLHDSNVSTAISALLREPDSGAGDNNL 99
           + K Q+AIQSL++I   T IPSTI       + LL D  VSTAIS+LL  PDSGAGDNNL
Sbjct: 32  NTKCQTAIQSLSTIVTNTNIPSTI-------TILLDDEAVSTAISSLLLRPDSGAGDNNL 84

Query: 100 CRWFYDTFQSTSPQLQLVVLRFVPIIAGLYLSRVPLRKPLAGFEAVLLALYAHETTSRNG 159
           CRW YDTFQS  P LQL+VLRFVP+IAGLYLSRVPLR+P AGFEAVLLALYAHETTSR G
Sbjct: 85  CRWLYDTFQSAEPSLQLLVLRFVPLIAGLYLSRVPLRQPQAGFEAVLLALYAHETTSRAG 144

Query: 160 QAIAVNIPDLSNSSVYHETKE-TSKNNATDLNLAVISPSLEPHGTVRSTRRARIVGVALE 218
           QAI VNIPDLS  S+YHE+K  T  NN+T LN+AVIS +L+PHGTVRSTRRARIVGVALE
Sbjct: 145 QAITVNIPDLSYPSIYHESKGLTRNNNSTCLNIAVISSTLDPHGTVRSTRRARIVGVALE 204

Query: 219 LYFSKLSLMPIGSKIDFCEFCELWG 243
           LY+SK+S MP  SK++FCE CE W 
Sbjct: 205 LYYSKISKMPRESKLNFCESCEKWA 229


>AT5G64090.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           plasma membrane; EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
           DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G21050.1); Has 266 Blast hits to 191 proteins
           in 57 species: Archae - 0; Bacteria - 0; Metazoa - 137;
           Fungi - 8; Plants - 30; Viruses - 0; Other Eukaryotes -
           91 (source: NCBI BLink). | chr5:25648069-25649415
           FORWARD
          Length = 448

 Score =  160 bits (405), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 86/202 (42%), Positives = 125/202 (61%), Gaps = 9/202 (4%)

Query: 61  STILSAQDPASSLLHDSNVSTAISALLREPDSGAGDNNLCRWFYDTFQSTSPQLQLVVLR 120
           S++  +  PA SLL      + IS  L  P SG+G + LC+W Y+T+ S+ P L+LVVL 
Sbjct: 89  SSLADSDRPALSLLSSRAAYSLISNSLCNPASGSGSDPLCQWLYETYLSSDPPLRLVVLS 148

Query: 121 FVPIIAGLYLSRVPLRK-----PLAGFEAVLLALYAHETTSRNGQAIAVNIPDLSNSSVY 175
           F P++ G+YLSR+          L+GFEAVLLA+YA E  +R G+ I V+IPDLS  S+Y
Sbjct: 149 FFPLLVGMYLSRIHSSDSTSLPSLSGFEAVLLAIYAAEVKARAGKPILVHIPDLSQPSLY 208

Query: 176 HETK---ETSKNNATDLNLAVISPSLEPHGTVRSTRRARIVGVALELYFSKLSLMPIGSK 232
           H  +   + S+++    ++ V+SP LEP   V+ST+RA IVGV L+ YF ++S MP  SK
Sbjct: 209 HTPRNGVDKSRDSNPTASVGVLSPQLEPQIAVKSTKRASIVGVGLQCYFKEISQMPAWSK 268

Query: 233 IDFCEFCELWGRSKMVKCTRKV 254
           ++FC+F   W   +   C  K+
Sbjct: 269 LEFCKFSASWA-GQDCDCKEKI 289