Jatropha Genome Database

JcCA0127871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0127871.10 + phase: 0 /partial
         (336 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56120.1 | Symbols:  | Met-10+ like family protein | chr3:208...   398   e-111
AT4G27340.1 | Symbols:  | Met-10+ like family protein | chr4:136...   132   5e-31
AT4G04670.1 | Symbols:  | Met-10+ like family protein / kelch re...    53   3e-07

>AT3G56120.1 | Symbols:  | Met-10+ like family protein |
           chr3:20823243-20826357 FORWARD
          Length = 468

 Score =  398 bits (1022), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/324 (62%), Positives = 236/324 (72%), Gaps = 19/324 (5%)

Query: 1   KNYPRIKTIVNKVGTITNEFRVPKFEILAGENDMVTEVKQYGATFKLDYGLVYWNSRLEH 60
           KNYPRIKTIVNKVGTI+NEFRVPKFE+LAGEN M TEVKQYGA FKLDYGLVYWNSRLEH
Sbjct: 146 KNYPRIKTIVNKVGTISNEFRVPKFEVLAGENGMETEVKQYGARFKLDYGLVYWNSRLEH 205

Query: 61  EHMRLVSQFKPGETICDMFAGIGPFAIPAAQKGCVVYANDLNPDSFQYLRLNAKLNKVDD 120
           EHMRL S FKPGET+CDMFAGIGPFAIPAAQKGC VYANDLNPDS +YL++NAK NKVDD
Sbjct: 206 EHMRLSSLFKPGETVCDMFAGIGPFAIPAAQKGCFVYANDLNPDSVRYLKINAKFNKVDD 265

Query: 121 RIFPYSMDARKFISQLMAAPNHENDLESEASALKACENHDLQGTEETKSAVDVKEAPDTV 180
            I  ++MDARKF S LMA    E++L+S A   K  E    +G E   S  +++E+  ++
Sbjct: 266 LICVHNMDARKFFSHLMAVSTCEDNLQSVADNDKTKEAAVSRGGETNSSGEEIRESNASI 325

Query: 181 PSDHEGTQDPCRKADTSVTAVKRPSHCFHEENENTHGGAISFTSRRKGSVNKRMRASELP 240
                         +  + A K+PS     EN     G        +G  NKR+R + LP
Sbjct: 326 --------------NEPLGANKKPSGTTKTEN-----GVGKDCKSIEGHANKRLRQTLLP 366

Query: 241 NTKPWEHVDHVVMNLPASALQFLDAFRGVIKKKDWMGQLPWIHCYCFIRANQTEETIISE 300
             KPWEH+DHV+MNLPASALQFLD+F  VI+KK W G LP IHCYCFIRA++T E II+E
Sbjct: 367 IAKPWEHIDHVIMNLPASALQFLDSFSNVIQKKYWKGPLPLIHCYCFIRASETTEFIIAE 426

Query: 301 AESALGACIQDPVFHRVREVAPNK 324
           AE+AL   I+DPVFH+VR+VAPNK
Sbjct: 427 AETALKFHIEDPVFHKVRDVAPNK 450


>AT4G27340.1 | Symbols:  | Met-10+ like family protein |
           chr4:13687366-13690370 REVERSE
          Length = 619

 Score =  132 bits (331), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 93/139 (66%)

Query: 1   KNYPRIKTIVNKVGTITNEFRVPKFEILAGENDMVTEVKQYGATFKLDYGLVYWNSRLEH 60
           KN P+I+T+VNK+  I N+FR  + E+LAG + +VT V + G  F +D   VYWNS+L  
Sbjct: 373 KNQPKIQTVVNKIDPIHNDFRTMQLEVLAGNHSLVTLVVENGLRFHVDLARVYWNSKLGT 432

Query: 61  EHMRLVSQFKPGETICDMFAGIGPFAIPAAQKGCVVYANDLNPDSFQYLRLNAKLNKVDD 120
           E  RL+  F   + +CD+FAG+GP A+ AA+    VYANDLNP + +++  N+ +NK++ 
Sbjct: 433 ERQRLLLGFDQNDVVCDVFAGVGPIALAAARIVKRVYANDLNPHAVEFMEQNSVVNKLEK 492

Query: 121 RIFPYSMDARKFISQLMAA 139
           RI  ++MD R+FI  + ++
Sbjct: 493 RIEIFNMDGRRFIKAMFSS 511



 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 246 EHVDHVVMNLPASALQFLDAFRGVI--KKKDWMGQLPWIHCYCFIRANQTEETIISEAES 303
           + V  VVMNLP  A + LDAFRGV   + +D     P IH Y F +A+  E         
Sbjct: 515 QKVTQVVMNLPKDAAESLDAFRGVYNDRHRDEGLSFPTIHVYGFSKASDPEFDFHERIRI 574

Query: 304 ALGACIQDPVFHRVREVAPNK 324
           AL     D    +VR VAP K
Sbjct: 575 ALSEVAVDVKMRKVRLVAPGK 595


>AT4G04670.1 | Symbols:  | Met-10+ like family protein / kelch
           repeat-containing protein | chr4:2367603-2371990 FORWARD
          Length = 995

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 18  NEFRVPKFEILAGENDMVTEVKQYGATFKLDYGLVYWNSRLEHEHMRLVSQFKPGETICD 77
           N  R    EIL G+N  V   ++ G  +  D     ++     E +R+ +     E + D
Sbjct: 785 NGTRDSTLEILVGDNGWVNH-RENGILYSFDATKCMFSWGNLSEKLRMGNMACENEVVVD 843

Query: 78  MFAGIGPFAIP--AAQKGCVVYANDLNPDSFQYLRLNAKLNKVDDRIFPYSMDAR 130
           +FAGIG F +P     K  +VYA + NP + + LR N + N V +R      D R
Sbjct: 844 LFAGIGYFVLPFLVRAKAKLVYACEWNPHAIEALRRNVEANSVSERCIILEGDNR 898