Jatropha Genome Database

JcCA0127101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0127101.10 - phase: 1 /partial
         (207 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G49720.2 | Symbols:  | unknown protein | chr3:18440192-184416...   325   1e-89
AT3G49720.1 | Symbols:  | unknown protein | chr3:18440192-184416...   325   1e-89
AT5G65810.1 | Symbols:  | unknown protein | chr5:26337833-263391...   317   2e-87

>AT3G49720.2 | Symbols:  | unknown protein | chr3:18440192-18441655
           REVERSE
          Length = 261

 Score =  325 bits (833), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 148/196 (75%), Positives = 173/196 (88%)

Query: 9   VSTIEGDFSCTVEVQRAIPILKKAYGDHMRKVLHVGPDTCSVVSLLLKEEETEAWGVEPY 68
           VS + GD+SCT EVQRAIP+LKKAYGD MRKVLHVGPDTCSVVS LLKEEETEAWGVEPY
Sbjct: 63  VSKVTGDYSCTAEVQRAIPVLKKAYGDGMRKVLHVGPDTCSVVSSLLKEEETEAWGVEPY 122

Query: 69  DIEDVDSHCRALVQKGNVRVADIKFPLPYRPKSFSLVIVSDALDYLSPRYLNRTLPELAR 128
           DIED DSHC++ V KG VRVADIKFPLPYR KSFSLVIVSDALDYLSP+YLN+T+PELAR
Sbjct: 123 DIEDADSHCKSFVSKGLVRVADIKFPLPYRAKSFSLVIVSDALDYLSPKYLNKTVPELAR 182

Query: 129 VSSEGLIIFTGFPGQHRSKVAEVSKFGKAAKLRSLSWWTRYFIQTSLDENEAAVKKFDQA 188
           V+S+G+++F G PGQ R+KVAE+SKFG+ AK+RS SWW R+F+QT+L+EN+A  KKF+QA
Sbjct: 183 VASDGVVLFAGLPGQQRAKVAELSKFGRPAKMRSASWWNRFFVQTNLEENDAPSKKFEQA 242

Query: 189 AAKKSYSPGCQIFHLK 204
            +K  Y P CQ+FHLK
Sbjct: 243 VSKGLYKPACQVFHLK 258


>AT3G49720.1 | Symbols:  | unknown protein | chr3:18440192-18441655
           REVERSE
          Length = 261

 Score =  325 bits (833), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 148/196 (75%), Positives = 173/196 (88%)

Query: 9   VSTIEGDFSCTVEVQRAIPILKKAYGDHMRKVLHVGPDTCSVVSLLLKEEETEAWGVEPY 68
           VS + GD+SCT EVQRAIP+LKKAYGD MRKVLHVGPDTCSVVS LLKEEETEAWGVEPY
Sbjct: 63  VSKVTGDYSCTAEVQRAIPVLKKAYGDGMRKVLHVGPDTCSVVSSLLKEEETEAWGVEPY 122

Query: 69  DIEDVDSHCRALVQKGNVRVADIKFPLPYRPKSFSLVIVSDALDYLSPRYLNRTLPELAR 128
           DIED DSHC++ V KG VRVADIKFPLPYR KSFSLVIVSDALDYLSP+YLN+T+PELAR
Sbjct: 123 DIEDADSHCKSFVSKGLVRVADIKFPLPYRAKSFSLVIVSDALDYLSPKYLNKTVPELAR 182

Query: 129 VSSEGLIIFTGFPGQHRSKVAEVSKFGKAAKLRSLSWWTRYFIQTSLDENEAAVKKFDQA 188
           V+S+G+++F G PGQ R+KVAE+SKFG+ AK+RS SWW R+F+QT+L+EN+A  KKF+QA
Sbjct: 183 VASDGVVLFAGLPGQQRAKVAELSKFGRPAKMRSASWWNRFFVQTNLEENDAPSKKFEQA 242

Query: 189 AAKKSYSPGCQIFHLK 204
            +K  Y P CQ+FHLK
Sbjct: 243 VSKGLYKPACQVFHLK 258


>AT5G65810.1 | Symbols:  | unknown protein | chr5:26337833-26339144
           REVERSE
          Length = 258

 Score =  317 bits (813), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 146/196 (74%), Positives = 171/196 (87%)

Query: 9   VSTIEGDFSCTVEVQRAIPILKKAYGDHMRKVLHVGPDTCSVVSLLLKEEETEAWGVEPY 68
           VS I GD+SCT EVQRAIPILK AYGD MRKVLHVGP+TCSVVS LL EEETEAWGVEPY
Sbjct: 60  VSKITGDYSCTAEVQRAIPILKSAYGDSMRKVLHVGPETCSVVSSLLNEEETEAWGVEPY 119

Query: 69  DIEDVDSHCRALVQKGNVRVADIKFPLPYRPKSFSLVIVSDALDYLSPRYLNRTLPELAR 128
           D+ED DS+C++L+ KG VRVADIKFPLPYR KSFSLVIVSDALDYLSPRYLN+T+PELAR
Sbjct: 120 DVEDADSNCKSLLHKGLVRVADIKFPLPYRSKSFSLVIVSDALDYLSPRYLNKTVPELAR 179

Query: 129 VSSEGLIIFTGFPGQHRSKVAEVSKFGKAAKLRSLSWWTRYFIQTSLDENEAAVKKFDQA 188
           V+S+G+++  G PGQ ++K  E+SKFG+ AK+RS SWW R+F QT+L+ENEAA KKF+QA
Sbjct: 180 VASDGVVLLAGNPGQQKAKGGELSKFGRPAKMRSSSWWIRFFSQTNLEENEAASKKFEQA 239

Query: 189 AAKKSYSPGCQIFHLK 204
           A+K SY P CQ+FHLK
Sbjct: 240 ASKSSYKPACQVFHLK 255