Jatropha Genome Database

JcCA0124371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0124371.10 - phase: 0 
         (95 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55440.1 | Symbols: ATCTIMC, TPI | TPI (TRIOSEPHOSPHATE ISOME...   115   7e-27
AT2G21170.2 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE); ca...    86   4e-18
AT2G21170.1 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE); ca...    86   4e-18

>AT3G55440.1 | Symbols: ATCTIMC, TPI | TPI (TRIOSEPHOSPHATE
           ISOMERASE); triose-phosphate isomerase |
           chr3:20553794-20556078 FORWARD
          Length = 254

 Score =  115 bits (287), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 55/70 (78%), Positives = 59/70 (84%)

Query: 26  VHFELRKWLKENTSPEVAETTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLKPEFIEI 85
           VH ELRKWL +N S +VA TTRIIYGGSV   NCKEL  Q DVDGFLVGGASLKPEFI+I
Sbjct: 185 VHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFLVGGASLKPEFIDI 244

Query: 86  IKSAEVKKSA 95
           IK+AEVKKSA
Sbjct: 245 IKAAEVKKSA 254


>AT2G21170.2 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE);
           catalytic/ triose-phosphate isomerase |
           chr2:9071047-9073106 REVERSE
          Length = 306

 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 49/71 (69%), Gaps = 1/71 (1%)

Query: 26  VHFELRKWLKENTSPEVAETTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLK-PEFIE 84
           VH  +R WLK+N S EVA  TRIIYGGSV   N  ELA + D+DGFLVGGASLK PEF  
Sbjct: 235 VHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFAT 294

Query: 85  IIKSAEVKKSA 95
           I+ S   KK A
Sbjct: 295 IVNSVTSKKVA 305


>AT2G21170.1 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE);
           catalytic/ triose-phosphate isomerase |
           chr2:9071047-9073106 REVERSE
          Length = 315

 Score = 85.9 bits (211), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 49/71 (69%), Gaps = 1/71 (1%)

Query: 26  VHFELRKWLKENTSPEVAETTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLK-PEFIE 84
           VH  +R WLK+N S EVA  TRIIYGGSV   N  ELA + D+DGFLVGGASLK PEF  
Sbjct: 244 VHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFAT 303

Query: 85  IIKSAEVKKSA 95
           I+ S   KK A
Sbjct: 304 IVNSVTSKKVA 314