Jatropha Genome Database

JcCA0123391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0123391.10 + phase: 0 /pseudo/partial
         (113 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G45790.1 | Symbols: ATPMM, PMM | PMM (PHOSPHOMANNOMUTASE); ph...   171   1e-43

>AT2G45790.1 | Symbols: ATPMM, PMM | PMM (PHOSPHOMANNOMUTASE);
           phosphomannomutase | chr2:18855876-18857753 FORWARD
          Length = 246

 Score =  171 bits (432), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/120 (69%), Positives = 97/120 (80%), Gaps = 9/120 (7%)

Query: 1   MINVSPIGRNCSQEERDEFEKYDKVHNIRPKMVSVLREKFSHLNLTFSIGGQISFDT--- 57
           M+NVSPIGRNCSQEERDEFE+YDKV NIRPKMV+ LRE+F+HLNLTFSIGGQISFD    
Sbjct: 127 MLNVSPIGRNCSQEERDEFERYDKVQNIRPKMVAELRERFAHLNLTFSIGGQISFDVFPK 186

Query: 58  A*DTSMSLM------KSTSFGDKTYKGGNDYEIYESDRTVGHTVTSPDDTVVQCKALFLA 111
             D +  L       +   FGDKTY+GGNDYEIYES +T+GH+VTSPDDTV +CKALF++
Sbjct: 187 GWDKTYCLQYLEDFSEIHFFGDKTYEGGNDYEIYESPKTIGHSVTSPDDTVAKCKALFMS 246