Jatropha Genome Database

JcCA0122941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122941.10 - phase: 0 
         (251 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G45760.1 | Symbols:  | transducin family protein / WD-40 repe...   307   4e-84
AT5G45760.2 | Symbols:  | transducin family protein / WD-40 repe...   252   1e-67
AT1G27840.2 | Symbols: ATCSA-1 | transducin family protein / WD-...    48   5e-06
AT1G27840.1 | Symbols: ATCSA-1 | transducin family protein / WD-...    47   8e-06
AT1G27840.3 | Symbols: ATCSA-1 | transducin family protein / WD-...    47   9e-06

>AT5G45760.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:18561121-18563005 FORWARD
          Length = 360

 Score =  307 bits (787), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 152/245 (62%), Positives = 190/245 (77%), Gaps = 13/245 (5%)

Query: 7   VKIIDIHQHCLYKTLRGGHTSICSSVQFIPWRPWEVITGGLDSKLVMWDFSRGRPLKIVD 66
           VKIID+ Q CLYKTLR GHTSICSSVQFIPWRPWEVITGGLDSKLV+WDFS+GR  KI+D
Sbjct: 129 VKIIDLGQKCLYKTLRAGHTSICSSVQFIPWRPWEVITGGLDSKLVLWDFSKGRSQKIID 188

Query: 67  FGLPDMKSSNTAQCFNPAFVHAIAVPDADMLDNSGHICIAGRGDGVLNVIDIESELAAIR 126
           FG     ++N+ QC NPAFVH+IA+P+ DM+D    IC   RGDG++N+I+IESEL+   
Sbjct: 189 FGSD--TNNNSGQCLNPAFVHSIAIPEMDMVDKLDKICAVARGDGIVNLINIESELSRKG 246

Query: 127 SKSTSKARKGSQSISKEYIATAGTDGSRLHLDYSLGGHVAAVSCVAFSLFRERGKFIISG 186
           + S   +   S ++ K           R+ LDYS+GGH +AVSCVAFSLF+E+G+F+ISG
Sbjct: 247 TSSKGSSSSSSNNVVK-----------RVCLDYSVGGHNSAVSCVAFSLFQEKGRFLISG 295

Query: 187 GNDKSVKVWDCFRYLGTGQSGCNNDILRLNIDLSKKVNWLCTTPTESENLVVCDTTKVVK 246
           GNDK+VK+WDCF+ L    +  N+D+L LNI+LSKKVNWLCT  ++SENLVVCDTT+VVK
Sbjct: 296 GNDKTVKIWDCFKCLDPNNNNNNSDLLHLNINLSKKVNWLCTNQSDSENLVVCDTTRVVK 355

Query: 247 VYSVS 251
           VYS+S
Sbjct: 356 VYSIS 360


>AT5G45760.2 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:18561121-18563005 FORWARD
          Length = 334

 Score =  252 bits (644), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 132/245 (53%), Positives = 168/245 (68%), Gaps = 39/245 (15%)

Query: 7   VKIIDIHQHCLYKTLRGGHTSICSSVQFIPWRPWEVITGGLDSKLVMWDFSRGRPLKIVD 66
           VKIID+ Q CLYKTLR GHTSICSSVQFIPWRPWE    G D+                 
Sbjct: 129 VKIIDLGQKCLYKTLRAGHTSICSSVQFIPWRPWE----GSDT----------------- 167

Query: 67  FGLPDMKSSNTAQCFNPAFVHAIAVPDADMLDNSGHICIAGRGDGVLNVIDIESELAAIR 126
                  ++N+ QC NPAFVH+IA+P+ DM+D    IC   RGDG++N+I+IESEL+   
Sbjct: 168 -------NNNSGQCLNPAFVHSIAIPEMDMVDKLDKICAVARGDGIVNLINIESELSRKG 220

Query: 127 SKSTSKARKGSQSISKEYIATAGTDGSRLHLDYSLGGHVAAVSCVAFSLFRERGKFIISG 186
           + S   +   S ++ K           R+ LDYS+GGH +AVSCVAFSLF+E+G+F+ISG
Sbjct: 221 TSSKGSSSSSSNNVVK-----------RVCLDYSVGGHNSAVSCVAFSLFQEKGRFLISG 269

Query: 187 GNDKSVKVWDCFRYLGTGQSGCNNDILRLNIDLSKKVNWLCTTPTESENLVVCDTTKVVK 246
           GNDK+VK+WDCF+ L    +  N+D+L LNI+LSKKVNWLCT  ++SENLVVCDTT+VVK
Sbjct: 270 GNDKTVKIWDCFKCLDPNNNNNNSDLLHLNINLSKKVNWLCTNQSDSENLVVCDTTRVVK 329

Query: 247 VYSVS 251
           VYS+S
Sbjct: 330 VYSIS 334


>AT1G27840.2 | Symbols: ATCSA-1 | transducin family protein / WD-40
           repeat family protein | chr1:9693332-9696257 REVERSE
          Length = 393

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 82/201 (40%), Gaps = 39/201 (19%)

Query: 5   LQVKIIDIHQHCLYKTLRGGHTSICSSVQFIPWRPWEVITGGLDSKLVMWDFSRGRPLKI 64
           +QV++ DI       TL  GH     SV++     W + TGG D  +  WD  R    ++
Sbjct: 113 VQVRLCDIASGAFSHTL-SGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRV 171

Query: 65  VDFGLPDMKSSNTAQCFNPAFVHAIAVPDADMLDNSGHICIAGRGDGVLNVIDIESELAA 124
           +D        S T   F P  +   AV     L +     + G           ++ L  
Sbjct: 172 LD-------QSQTQLGFRPPILKRTAV--GSKLSSVAKSSLGG-----------QNRLKT 211

Query: 125 IRSKSTSKARKGSQSISKEYIATAGTDGS---RLH------LDYSLGGHVAAVSCVAFSL 175
           ++SK T     GSQS+     A A  + S   R+H      LD +   H  AV+ +  + 
Sbjct: 212 LQSKQT-----GSQSVKGSSSAKASVEKSRQKRIHPGMLSTLDRAT-AHYGAVTGLKAT- 264

Query: 176 FRERGKFIISGGNDKSVKVWD 196
               G +++S G+D  +++WD
Sbjct: 265 --NDGMYLLSAGSDSRIRLWD 283


>AT1G27840.1 | Symbols: ATCSA-1 | transducin family protein / WD-40
           repeat family protein | chr1:9693332-9696257 REVERSE
          Length = 450

 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 82/201 (40%), Gaps = 39/201 (19%)

Query: 5   LQVKIIDIHQHCLYKTLRGGHTSICSSVQFIPWRPWEVITGGLDSKLVMWDFSRGRPLKI 64
           +QV++ DI       TL  GH     SV++     W + TGG D  +  WD  R    ++
Sbjct: 170 VQVRLCDIASGAFSHTL-SGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRV 228

Query: 65  VDFGLPDMKSSNTAQCFNPAFVHAIAVPDADMLDNSGHICIAGRGDGVLNVIDIESELAA 124
           +D        S T   F P  +   AV     L +     + G           ++ L  
Sbjct: 229 LD-------QSQTQLGFRPPILKRTAV--GSKLSSVAKSSLGG-----------QNRLKT 268

Query: 125 IRSKSTSKARKGSQSISKEYIATAGTDGS---RLH------LDYSLGGHVAAVSCVAFSL 175
           ++SK T     GSQS+     A A  + S   R+H      LD +   H  AV+ +  + 
Sbjct: 269 LQSKQT-----GSQSVKGSSSAKASVEKSRQKRIHPGMLSTLDRAT-AHYGAVTGLKAT- 321

Query: 176 FRERGKFIISGGNDKSVKVWD 196
               G +++S G+D  +++WD
Sbjct: 322 --NDGMYLLSAGSDSRIRLWD 340


>AT1G27840.3 | Symbols: ATCSA-1 | transducin family protein / WD-40
           repeat family protein | chr1:9693332-9696257 REVERSE
          Length = 451

 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 82/201 (40%), Gaps = 39/201 (19%)

Query: 5   LQVKIIDIHQHCLYKTLRGGHTSICSSVQFIPWRPWEVITGGLDSKLVMWDFSRGRPLKI 64
           +QV++ DI       TL  GH     SV++     W + TGG D  +  WD  R    ++
Sbjct: 170 VQVRLCDIASGAFSHTL-SGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRV 228

Query: 65  VDFGLPDMKSSNTAQCFNPAFVHAIAVPDADMLDNSGHICIAGRGDGVLNVIDIESELAA 124
           +D        S T   F P  +   AV     L +     + G           ++ L  
Sbjct: 229 LD-------QSQTQLGFRPPILKRTAV--GSKLSSVAKSSLGG-----------QNRLKT 268

Query: 125 IRSKSTSKARKGSQSISKEYIATAGTDGS---RLH------LDYSLGGHVAAVSCVAFSL 175
           ++SK T     GSQS+     A A  + S   R+H      LD +   H  AV+ +  + 
Sbjct: 269 LQSKQT-----GSQSVKGSSSAKASVEKSRQKRIHPGMLSTLDRAT-AHYGAVTGLKAT- 321

Query: 176 FRERGKFIISGGNDKSVKVWD 196
               G +++S G+D  +++WD
Sbjct: 322 --NDGMYLLSAGSDSRIRLWD 340