Jatropha Genome Database
- JcCA0122251.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0122251.10 - phase: 0 /partial
(179 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G64740.1 | Symbols: CESA6, IXR2, E112, PRC1 | CESA6 (CELLULOS... 242 9e-65
AT4G39350.1 | Symbols: CESA2, ATH-A, ATCESA2 | CESA2 (CELLULOSE ... 227 2e-60
AT2G21770.1 | Symbols: CESA9, CESA09 | CESA9 (CELLULOSE SYNTHASE... 221 2e-58
AT5G09870.1 | Symbols: CESA5 | CESA5 (CELLULOSE SYNTHASE 5); cel... 221 3e-58
AT5G17420.1 | Symbols: IRX3, CESA7, ATCESA7, MUR10 | IRX3 (IRREG... 149 1e-36
AT4G32410.1 | Symbols: CESA1, RSW1 | CESA1 (CELLULOSE SYNTHASE 1... 132 1e-31
AT2G25540.1 | Symbols: CESA10 | CESA10 (CELLULOSE SYNTHASE 10); ... 128 2e-30
AT5G05170.1 | Symbols: CESA3, IXR1, ATCESA3, ATH-B, CEV1 | CEV1 ... 116 6e-27
AT5G44030.1 | Symbols: CESA4, IRX5, NWS2 | CESA4 (CELLULOSE SYNT... 100 5e-22
AT4G18780.1 | Symbols: CESA8, IRX1, ATCESA8, LEW2 | IRX1 (IRREGU... 70 6e-13
>AT5G64740.1 | Symbols: CESA6, IXR2, E112, PRC1 | CESA6 (CELLULOSE
SYNTHASE 6); cellulose synthase/ transferase,
transferring glycosyl groups | chr5:25881555-25886333
FORWARD
Length = 1084
Score = 242 bits (618), Expect = 9e-65, Method: Composition-based stats.
Identities = 116/179 (64%), Positives = 131/179 (73%), Gaps = 11/179 (6%)
Query: 1 MNTGGRLVAGSHNRNEFVLINADESGRIKSVQELSGQVCQICGDEIEITVDGEPFVACNE 60
MNTGGRL+AGSHNRNEFVLINADE+ RI+SVQELSGQ CQIC DEIE+TVDGEPFVACNE
Sbjct: 1 MNTGGRLIAGSHNRNEFVLINADENARIRSVQELSGQTCQICRDEIELTVDGEPFVACNE 60
Query: 61 CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVXXXXXXXXXXXXXXXXXYGNFDG 120
CAFPVCRPCYEYERREGNQACPQCKTR+KR+KGSPRV YGN +G
Sbjct: 61 CAFPVCRPCYEYERREGNQACPQCKTRFKRLKGSPRVEGDEEEDDIDDLDNEFEYGN-NG 119
Query: 121 MGPEQVAEAMLSARLNTGRASYSNAAGIPTXXXXXXXXXXXKIPLLTYGEEDAEISSDR 179
+G +QV+E M +R N+G + P +IPLLTYG+ED EISSDR
Sbjct: 120 IGFDQVSEGMSISRRNSGFPQSDLDSAPP----------GSQIPLLTYGDEDVEISSDR 168
>AT4G39350.1 | Symbols: CESA2, ATH-A, ATCESA2 | CESA2 (CELLULOSE
SYNTHASE A2); cellulose synthase/ transferase,
transferring glycosyl groups | chr4:18297078-18301890
FORWARD
Length = 1084
Score = 227 bits (579), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/180 (66%), Positives = 128/180 (71%), Gaps = 17/180 (9%)
Query: 1 MNTGGRLVAGSHNRNEFVLINADESGRIKSVQELSGQVCQICGDEIEITVDGEPFVACNE 60
MNTGGRL+AGSHNRNEFVLINADES RI+SVQELSGQ CQICGDEIE+TV E FVACNE
Sbjct: 1 MNTGGRLIAGSHNRNEFVLINADESARIRSVQELSGQTCQICGDEIELTVSSELFVACNE 60
Query: 61 CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVXXXXXXXXXXXXXXXXXYGNFD- 119
CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRV FD
Sbjct: 61 CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDDEEEEDIDDLEY----EFDH 116
Query: 120 GMGPEQVAEAMLSARLNTGRASYSNAAGIPTXXXXXXXXXXXKIPLLTYGEEDAEISSDR 179
GM PE AEA LS+RLNTGR +A +IPLLTY +EDA++ SDR
Sbjct: 117 GMDPEHAAEAALSSRLNTGRGGLDSAP------------PGSQIPLLTYCDEDADMYSDR 164
>AT2G21770.1 | Symbols: CESA9, CESA09 | CESA9 (CELLULOSE SYNTHASE
A9); cellulose synthase/ transferase, transferring
glycosyl groups | chr2:9284837-9289495 FORWARD
Length = 1088
Score = 221 bits (563), Expect = 2e-58, Method: Composition-based stats.
Identities = 109/186 (58%), Positives = 126/186 (67%), Gaps = 25/186 (13%)
Query: 1 MNTGGRLVAGSHNRNEFVLINADESGRIKSVQELSGQVCQICGDEIEITVDGEPFVACNE 60
MNTGGRL+AGSHNRNEFVLINAD++ RI+S +ELSGQ C+IC DEIE+T +GEPF+ACNE
Sbjct: 1 MNTGGRLIAGSHNRNEFVLINADDTARIRSAEELSGQTCKICRDEIELTDNGEPFIACNE 60
Query: 61 CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVXXXXXXXXXXXXXXXXXYGNFDG 120
CAFP CRPCYEYERREGNQACPQC TRYKRIKGSPRV F G
Sbjct: 61 CAFPTCRPCYEYERREGNQACPQCGTRYKRIKGSPRVEGDEEDDDIDDLEHE-----FYG 115
Query: 121 MGPEQVAEAML-SARLNTGRAS------YSNAAGIPTXXXXXXXXXXXKIPLLTYGEEDA 173
M PE V EA L RLNTGR + YS + G ++PLLTY +ED+
Sbjct: 116 MDPEHVTEAALYYMRLNTGRGTDEVSHLYSASPG-------------SEVPLLTYCDEDS 162
Query: 174 EISSDR 179
++ SDR
Sbjct: 163 DMYSDR 168
>AT5G09870.1 | Symbols: CESA5 | CESA5 (CELLULOSE SYNTHASE 5);
cellulose synthase/ transferase, transferring glycosyl
groups | chr5:3073356-3077974 FORWARD
Length = 1069
Score = 221 bits (562), Expect = 3e-58, Method: Composition-based stats.
Identities = 109/178 (61%), Positives = 121/178 (67%), Gaps = 20/178 (11%)
Query: 1 MNTGGRLVAGSHNRNEFVLINADESGRIKSVQELSGQVCQICGDEIEITVDGEPFVACNE 60
MNTGGRL+AGSHNRNEFVLINADES RI+SV+ELSGQ CQICGDEIE++VDGE FVACNE
Sbjct: 1 MNTGGRLIAGSHNRNEFVLINADESARIRSVEELSGQTCQICGDEIELSVDGESFVACNE 60
Query: 61 CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVXXXXXXXXXXXXXXXXXYGNFDG 120
CAFPVCRPCYEYERREGNQ+CPQCKTRYKRIKGSPRV Y
Sbjct: 61 CAFPVCRPCYEYERREGNQSCPQCKTRYKRIKGSPRVEGDEEDDGIDDLDFEFDY----- 115
Query: 121 MGPEQVAEAMLSARLNTGRASYSNAAGIPTXXXXXXXXXXXKIPLLTYGEEDAEISSD 178
+ + L + + R S + A P +IPLLTYGEED EISSD
Sbjct: 116 ------SRSGLESETFSRRNSEFDLASAPP---------GSQIPLLTYGEEDVEISSD 158
>AT5G17420.1 | Symbols: IRX3, CESA7, ATCESA7, MUR10 | IRX3
(IRREGULAR XYLEM 3); cellulose synthase |
chr5:5736859-5741407 REVERSE
Length = 1026
Score = 149 bits (375), Expect = 1e-36, Method: Composition-based stats.
Identities = 64/97 (65%), Positives = 75/97 (77%), Gaps = 2/97 (2%)
Query: 1 MNTGGRLVAGSHNRNEFVLINADESGRIKSVQELSGQVCQICGDEIEITVDGEPFVACNE 60
M LVAGSHNRNE V+I+ E K ++ L GQ C+ICGD+I +TV+G+ FVACNE
Sbjct: 1 MEASAGLVAGSHNRNELVVIHNHEEP--KPLKNLDGQFCEICGDQIGLTVEGDLFVACNE 58
Query: 61 CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRV 97
C FP CRPCYEYERREG Q CPQCKTRYKR++GSPRV
Sbjct: 59 CGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRV 95
>AT4G32410.1 | Symbols: CESA1, RSW1 | CESA1 (CELLULOSE SYNTHASE
1); cellulose synthase/ transferase, transferring
glycosyl groups | chr4:15641009-15646388 REVERSE
Length = 1081
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 73/97 (75%)
Query: 1 MNTGGRLVAGSHNRNEFVLINADESGRIKSVQELSGQVCQICGDEIEITVDGEPFVACNE 60
M LVAGS+ RNE V I + G K ++ ++GQ+CQICGD++ + G+ FVACNE
Sbjct: 1 MEASAGLVAGSYRRNELVRIRHESDGGTKPLKNMNGQICQICGDDVGLAETGDVFVACNE 60
Query: 61 CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRV 97
CAFPVCRPCYEYER++G Q CPQCKTR++R +GSPRV
Sbjct: 61 CAFPVCRPCYEYERKDGTQCCPQCKTRFRRHRGSPRV 97
>AT2G25540.1 | Symbols: CESA10 | CESA10 (CELLULOSE SYNTHASE 10);
cellulose synthase/ transferase, transferring glycosyl
groups | chr2:10867070-10872077 REVERSE
Length = 1065
Score = 128 bits (321), Expect = 2e-30, Method: Composition-based stats.
Identities = 51/91 (56%), Positives = 69/91 (75%)
Query: 7 LVAGSHNRNEFVLINADESGRIKSVQELSGQVCQICGDEIEITVDGEPFVACNECAFPVC 66
+VAGS+ R EFV D +K +++L+GQ+CQICGD++ +T G FVACNEC FP+C
Sbjct: 1 MVAGSYRRYEFVRNRDDSDDGLKPLKDLNGQICQICGDDVGLTKTGNVFVACNECGFPLC 60
Query: 67 RPCYEYERREGNQACPQCKTRYKRIKGSPRV 97
+ CYEYER++G+Q CPQCK R++R GSPRV
Sbjct: 61 QSCYEYERKDGSQCCPQCKARFRRHNGSPRV 91
>AT5G05170.1 | Symbols: CESA3, IXR1, ATCESA3, ATH-B, CEV1 | CEV1
(CONSTITUTIVE EXPRESSION OF VSP 1); cellulose synthase/
transferase, transferring glycosyl groups |
chr5:1530401-1535090 REVERSE
Length = 1065
Score = 116 bits (291), Expect = 6e-27, Method: Composition-based stats.
Identities = 45/69 (65%), Positives = 57/69 (82%)
Query: 29 KSVQELSGQVCQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88
K ++ + Q CQIC D + TVDG+ FVAC+ C+FPVCRPCYEYER++GNQ+CPQCKTRY
Sbjct: 10 KPMKNIVPQTCQICSDNVGKTVDGDRFVACDICSFPVCRPCYEYERKDGNQSCPQCKTRY 69
Query: 89 KRIKGSPRV 97
KR+KGSP +
Sbjct: 70 KRLKGSPAI 78
>AT5G44030.1 | Symbols: CESA4, IRX5, NWS2 | CESA4 (CELLULOSE
SYNTHASE A4); cellulose synthase/ transferase,
transferring glycosyl groups | chr5:17714713-17719564
FORWARD
Length = 1049
Score = 100 bits (249), Expect = 5e-22, Method: Composition-based stats.
Identities = 36/64 (56%), Positives = 50/64 (78%)
Query: 34 LSGQVCQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKG 93
S ++C++CGDE++ +G+ FVAC+ C +PVC+PCYEYER GN+ CPQC T YKR KG
Sbjct: 18 FSAKICKVCGDEVKDDDNGQTFVACHVCVYPVCKPCYEYERSNGNKCCPQCNTLYKRHKG 77
Query: 94 SPRV 97
SP++
Sbjct: 78 SPKI 81
>AT4G18780.1 | Symbols: CESA8, IRX1, ATCESA8, LEW2 | IRX1
(IRREGULAR XYLEM 1); cellulose synthase/ transferase,
transferring glycosyl groups | chr4:10312846-10316719
REVERSE
Length = 985
Score = 70.1 bits (170), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 31 VQELSGQVCQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88
+ E +C CG+EI + +GE FVAC+EC+FP+C+ C EYE +EG + C +C Y
Sbjct: 1 MMESRSPICNTCGEEIGVKSNGEFFVACHECSFPICKACLEYEFKEGRRICLRCGNPY 58