Jatropha Genome Database

JcCA0122171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122171.10 - phase: 0 /partial
         (107 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03220.1 | Symbols:  | transcriptional co-activator-related |...   155   5e-39
AT5G03500.2 | Symbols:  | transcription coactivator | chr5:87667...   151   9e-38
AT5G03500.1 | Symbols:  | transcription coactivator | chr5:87667...   151   9e-38

>AT5G03220.1 | Symbols:  | transcriptional co-activator-related |
           chr5:767617-768584 REVERSE
          Length = 168

 Score =  155 bits (392), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 77/107 (71%), Positives = 84/107 (78%)

Query: 1   MATATXXXXXXXXRLYKDYLQNPKSAXXXXXXIEGTYVCFGANYTTEYVLPSLEEQGVRQ 60
           MATAT        RLYKDY +NP SA      IEGTYVCFG NYTTE VLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPKGPNVDFKKELRSLNRELQLHILELADVLVERPSQYARRVEDIS 107
           LYPK  N+D+K ELRSLNRELQLHILELADVLV+RPSQYA+R+ +IS
Sbjct: 61  LYPKDSNLDYKNELRSLNRELQLHILELADVLVDRPSQYAKRIGEIS 107


>AT5G03500.2 | Symbols:  | transcription coactivator |
           chr5:876673-877660 REVERSE
          Length = 168

 Score =  151 bits (381), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 76/107 (71%), Positives = 84/107 (78%)

Query: 1   MATATXXXXXXXXRLYKDYLQNPKSAXXXXXXIEGTYVCFGANYTTEYVLPSLEEQGVRQ 60
           MATAT        RLYKD+ +N  SA      IEGTYVCFG NYTTE VLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPKGPNVDFKKELRSLNRELQLHILELADVLVERPSQYARRVEDIS 107
           LYPK  N+D+KKELRSLNRELQLHILELADVLV+RPSQYA+R+ +IS
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEIS 107


>AT5G03500.1 | Symbols:  | transcription coactivator |
           chr5:876673-877660 REVERSE
          Length = 168

 Score =  151 bits (381), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 76/107 (71%), Positives = 84/107 (78%)

Query: 1   MATATXXXXXXXXRLYKDYLQNPKSAXXXXXXIEGTYVCFGANYTTEYVLPSLEEQGVRQ 60
           MATAT        RLYKD+ +N  SA      IEGTYVCFG NYTTE VLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPKGPNVDFKKELRSLNRELQLHILELADVLVERPSQYARRVEDIS 107
           LYPK  N+D+KKELRSLNRELQLHILELADVLV+RPSQYA+R+ +IS
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEIS 107