Jatropha Genome Database

JcCA0122071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122071.10 + phase: 0 
         (136 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G59380.1 | Symbols: MBD6, ATMBD6 | MBD6; DNA binding / DNA de...    57   4e-09

>AT5G59380.1 | Symbols: MBD6, ATMBD6 | MBD6; DNA binding / DNA
           demethylase/ methyl-CpG binding | chr5:23952321-23953485
           FORWARD
          Length = 225

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 15/103 (14%)

Query: 33  DPLLQNGSYIDPSNNLPTSGQTTIKPNKDNXXXXXXXXXXXNG-------VEAETPVKSR 85
           DPLL +G++I  + +         +P +              G       V  +T  KSR
Sbjct: 12  DPLLASGAFISSAGDGTLDSSAKRRPIQGGIGISGSGESVRIGMANGTDQVNHQTESKSR 71

Query: 86  RKVPVTMAPGSAESASWLPPGWLVEDRVRTSGATAGTVDKVHF 128
           ++     APG     +WLPPGW VED++RTSGATAG+VDK ++
Sbjct: 72  KRA----APGD----NWLPPGWRVEDKIRTSGATAGSVDKYYY 106