Jatropha Genome Database

JcCA0122021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122021.20 + phase: 0 /partial
         (96 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G03590.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    59   5e-10
AT2G35605.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    55   7e-09
AT4G34290.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    54   3e-08
AT2G14880.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    52   1e-07
AT1G49520.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    49   5e-07
AT3G19080.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    47   3e-06

>AT3G03590.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr3:865341-866669 REVERSE
          Length = 143

 Score = 58.9 bits (141), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 31/40 (77%)

Query: 54  GILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
           GI KVTPVSP L  FLG  E+SRTDA+K IW +IK ++LQ
Sbjct: 63  GIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQ 102


>AT2G35605.1 | Symbols:  | SWIB complex BAF60b domain-containing
          protein | chr2:14946161-14947027 FORWARD
          Length = 109

 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 31/43 (72%)

Query: 51 QPAGILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
          Q  GILKV PVS  L +F+G  E SRT AVKKIW +IK NNLQ
Sbjct: 26 QGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQ 68


>AT4G34290.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr4:16410883-16412122 FORWARD
          Length = 144

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 34/43 (79%)

Query: 51  QPAGILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
           +P GI+K  PVS A++D +GVPE  RT A+K+IW +IK+++LQ
Sbjct: 64  EPRGIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQ 106


>AT2G14880.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr2:6393686-6394841 REVERSE
          Length = 141

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 33/42 (78%)

Query: 52  PAGILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
           P GI+K  PVSP ++D + +PE +RT A+K+IW +IK+++LQ
Sbjct: 62  PRGIMKPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQ 103


>AT1G49520.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr1:18329736-18331691 FORWARD
          Length = 372

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 47  EKPLQPAG-ILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
           EKP +  G   KV  +SP L+ F G P+ +RT+ VK +W +IK+NNLQ
Sbjct: 242 EKPKKKGGGFTKVCSLSPELQAFTGTPQLARTEVVKMLWKYIKENNLQ 289


>AT3G19080.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr3:6596082-6598667 FORWARD
          Length = 462

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 47  EKPLQPAG--ILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
           EKP +  G    KV  +SP L+ F GV E +RT+ VK +W +IK+NNLQ
Sbjct: 254 EKPKRKGGGGFAKVCSLSPELQAFTGVTELARTEVVKLLWKYIKENNLQ 302