Jatropha Genome Database

JcCA0122021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122021.10 - phase: 0 
         (110 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATS...    92   7e-20

>AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1,
          ATSIG2 | SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA
          binding / DNA-directed RNA polymerase/ sigma factor/
          transcription factor | chr1:2703461-2706696 FORWARD
          Length = 572

 Score = 92.0 bits (227), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 62/94 (65%), Gaps = 7/94 (7%)

Query: 2  SCLLPQFKCQPDTFSIHFRTHYLQNSNFCQSAKSREPVCFRAQCILSTTSPSTSTAVLDL 61
          SCLLPQFKC PD+FSIHFRT      +FC    ++  V F+ QC +ST SP+  T++LD+
Sbjct: 3  SCLLPQFKCPPDSFSIHFRT------SFCAPKHNKGSVFFQPQCAVST-SPALLTSMLDV 55

Query: 62 EKLRLPSFEAHPDSLVANSPWTYVGSIGPPKEVR 95
           KLRLPSF+   DSL+++  WTY    GP  E +
Sbjct: 56 AKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAK 89