Jatropha Genome Database

JcCA0120961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0120961.10 - phase: 0 /TE/partial
         (607 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00820.1 | Symbols: ORF170 | hypothetical protein | chrM:2285...    68   2e-11
AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...    62   9e-10

>ATMG00820.1 | Symbols: ORF170 | hypothetical protein |
           chrM:228573-229085 REVERSE
          Length = 170

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 506 MVTRSKPC--DLIPK-AFLVAFNLPPVPSYYSKATPDPKWHQAMSEEFNALIXTNIQTLV 562
           M+TRSK     L PK +  +   +   P     A  DP W QAM EE +AL       LV
Sbjct: 1   MLTRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILV 60

Query: 563 PQTEAYNVVECKGVYRIKXKPXGIINRYKARLVAKGYHQXHGIDF 607
           P     N++ CK V++ K    G ++R KARLVAKG+HQ  GI F
Sbjct: 61  PPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYF 105


>AT4G23160.1 | Symbols:  | protein kinase family protein |
           chr4:12129485-12134086 FORWARD
          Length = 1262

 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 519 AFLVAFNLPPVPSYYSKATPDPKWHQAMSEEFNALIXT---NIQTLVPQTEAYNVVECKG 575
           +FLV       PS Y++A     W  AM +E  A+  T    I TL P  +    + CK 
Sbjct: 75  SFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKP---IGCKW 131

Query: 576 VYRIKXKPXGIINRYKARLVAKGYHQXHGIDF 607
           VY+IK    G I RYKARLVAKGY Q  GIDF
Sbjct: 132 VYKIKYNSDGTIERYKARLVAKGYTQQEGIDF 163