Jatropha Genome Database

JcCA0120941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0120941.10 - phase: 0 
         (257 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09050.1 | Symbols:  | unknown protein | chr3:2764860-2765907...   290   6e-79

>AT3G09050.1 | Symbols:  | unknown protein | chr3:2764860-2765907
           FORWARD
          Length = 258

 Score =  290 bits (742), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 150/258 (58%), Positives = 186/258 (72%), Gaps = 4/258 (1%)

Query: 1   MMALKAINTSFSPTKHTLFRTRRPINQKNSILYLCXXXXXXXXXXXXXXX---XGDTRKQ 57
           M  L A  T+ +P  H LF   R    +   L L                    GDTR+Q
Sbjct: 2   MNTLHAFQTTLTPNFHVLFNASRHSLSRPQFLCLSKSGDGTSDSDSDPDPPKPEGDTRRQ 61

Query: 58  ELLARIAMLQAQKVRLTDYLDERSAYLTQFAEEANAEFDKIGEDALKGLDEAGTRIMENI 117
           ELLARIAM+Q  KVRLTD+LDERS YLT+FAEEANAEFDK+GEDA+K LDEA TRI+ENI
Sbjct: 62  ELLARIAMIQTSKVRLTDFLDERSEYLTKFAEEANAEFDKVGEDAMKDLDEASTRILENI 121

Query: 118 ESQMQAFEESAELNKQEIEKNENKIADFEGQIVKDRNEGMFFKNLGQKPPVDKAKAKVEA 177
           ES+MQAFEESA LN+ EIE+N+NK+A+FE +I  DRNEG+FFK+L  K PVD+ +A+ E 
Sbjct: 122 ESKMQAFEESAGLNRLEIEENDNKLAEFEEKIQVDRNEGLFFKSLRDKKPVDREQAREET 181

Query: 178 ERIKELIKTKAGSKARKNIYLALIGVLVIVIADSFISSSPDWRKVAVLGAILVGLITQLS 237
           E+I+E+ K  AGSK+R+NIYL LIG++V+ IADSF+ SSPDWRKVA+LGAILV L+TQ  
Sbjct: 182 EKIQEVTKESAGSKSRRNIYLGLIGIVVLAIADSFV-SSPDWRKVAILGAILVPLLTQFV 240

Query: 238 YEQRLSSEIESMEKTDKE 255
           YEQ L SE +  ++  KE
Sbjct: 241 YEQTLLSEADKGKENKKE 258