Jatropha Genome Database
- JcCA0118761.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0118761.10 - phase: 2 /pseudo/partial
(192 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G28305.1 | Symbols: | unknown protein | chr2:12081186-120843... 307 3e-84
AT2G37210.1 | Symbols: | Encodes a protein of unknown function.... 304 2e-83
AT3G53450.1 | Symbols: | unknown protein | chr3:19812977-198154... 300 5e-82
AT5G06300.1 | Symbols: | carboxy-lyase | chr5:1922042-1925278 R... 293 4e-80
AT2G35990.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 271 2e-73
AT4G35190.1 | Symbols: | unknown protein | chr4:16746724-167480... 265 1e-71
AT5G11950.2 | Symbols: | protein homodimerization | chr5:385507... 251 2e-67
AT5G11950.1 | Symbols: | protein homodimerization | chr5:385507... 251 2e-67
AT2G35990.3 | Symbols: | FUNCTIONS IN: molecular_function unkno... 239 7e-64
AT2G35990.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 239 7e-64
AT5G03270.1 | Symbols: | unknown protein | chr5:781870-783997 F... 212 1e-55
AT5G26140.1 | Symbols: | lysine decarboxylase family protein | ... 163 6e-41
>AT2G28305.1 | Symbols: | unknown protein | chr2:12081186-12084307
FORWARD
Length = 213
Score = 307 bits (786), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 146/179 (81%), Positives = 166/179 (92%), Gaps = 1/179 (0%)
Query: 14 VERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGEPVGEVRAVSDMHQ 73
V RNIDLVYGGGSIGLMGL+SQAV++GGRHV+GVIPKTLMPREITGE VGEV+AV+DMHQ
Sbjct: 36 VSRNIDLVYGGGSIGLMGLISQAVFNGGRHVIGVIPKTLMPREITGETVGEVKAVADMHQ 95
Query: 74 RKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKA 133
RKAEMA+ +DAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV+GYYNSLLSFIDKA
Sbjct: 96 RKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVEGYYNSLLSFIDKA 155
Query: 134 VDEGFITPSARHIIVSAPTAQELMSKLEEYEPRHSGVASKLTWEMEQQLGYTIKSEIAR 192
V+EGFI+P+ARHIIVSAP+A+EL+ KLE+Y PRH VASK +WEME Q+G + EI+R
Sbjct: 156 VEEGFISPTARHIIVSAPSAKELVKKLEDYVPRHEKVASKKSWEME-QIGLSPTCEISR 213
>AT2G37210.1 | Symbols: | Encodes a protein of unknown function.
It has been crystallized and shown to be structurally
almost identical to the protein encoded by At5g11950. |
chr2:15624253-15626834 REVERSE
Length = 215
Score = 304 bits (779), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 145/172 (84%), Positives = 161/172 (93%), Gaps = 1/172 (0%)
Query: 14 VERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGEPVGEVRAVSDMHQ 73
V RNIDLVYGGGSIGLMGLVSQAV+DGGRHV+G+IPKTLMPRE+TGE VGEVRAV+DMHQ
Sbjct: 42 VSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGIIPKTLMPRELTGETVGEVRAVADMHQ 101
Query: 74 RKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKA 133
RKAEMA+ +DAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKA
Sbjct: 102 RKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKA 161
Query: 134 VDEGFITPSARHIIVSAPTAQELMSKLEEYEPRHSGVASKLTWEMEQQLGYT 185
V+EGFI+P+AR IIVSAPTA+EL+ KLEEY P H VA+KL WEME ++GY+
Sbjct: 162 VEEGFISPTAREIIVSAPTAKELVKKLEEYAPCHERVATKLCWEME-RIGYS 212
>AT3G53450.1 | Symbols: | unknown protein | chr3:19812977-19815430
REVERSE
Length = 215
Score = 300 bits (767), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 142/167 (85%), Positives = 156/167 (93%)
Query: 14 VERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGEPVGEVRAVSDMHQ 73
V RNIDLVYGGGSIGLMGLVSQAV+DGGRHV+GVIPKTLMPRE+TGE VGEVRAV+DMHQ
Sbjct: 42 VLRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVRAVADMHQ 101
Query: 74 RKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKA 133
RKAEMAR +DAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKA
Sbjct: 102 RKAEMARHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKA 161
Query: 134 VDEGFITPSARHIIVSAPTAQELMSKLEEYEPRHSGVASKLTWEMEQ 180
V+EGFI+ +AR II+SAPTA+EL+ KLEEY P H VA+KL WE+E+
Sbjct: 162 VEEGFISTNARQIIISAPTAKELVKKLEEYSPCHESVATKLCWEIER 208
>AT5G06300.1 | Symbols: | carboxy-lyase | chr5:1922042-1925278
REVERSE
Length = 217
Score = 293 bits (751), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 142/178 (79%), Positives = 157/178 (88%)
Query: 14 VERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGEPVGEVRAVSDMHQ 73
VER IDLVYGGGS+GLMGLVSQAV+ GGRHVLGVIPKTLMPREITGE +GEV+AV+DMHQ
Sbjct: 37 VERRIDLVYGGGSVGLMGLVSQAVHHGGRHVLGVIPKTLMPREITGETIGEVKAVADMHQ 96
Query: 74 RKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKA 133
RKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIH KPVGLLNVDGYYNSLL+FIDKA
Sbjct: 97 RKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGYYNSLLTFIDKA 156
Query: 134 VDEGFITPSARHIIVSAPTAQELMSKLEEYEPRHSGVASKLTWEMEQQLGYTIKSEIA 191
VDEGFI+P AR IIVSAP A+EL+ +LEEYEP + SKL W+ ++ Y SE+A
Sbjct: 157 VDEGFISPMARRIIVSAPNAKELVRQLEEYEPEFDEITSKLVWDEVDRISYVPGSEVA 214
>AT2G35990.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 15 plant
structures; EXPRESSED DURING: 8 growth stages; CONTAINS
InterPro DOMAIN/s: Conserved hypothetical protein
CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana
protein match is: carboxy-lyase (TAIR:AT5G06300.1); Has
3002 Blast hits to 3001 proteins in 744 species: Archae
- 8; Bacteria - 1757; Metazoa - 10; Fungi - 79; Plants -
185; Viruses - 0; Other Eukaryotes - 963 (source: NCBI
BLink). | chr2:15114070-15116647 FORWARD
Length = 213
Score = 271 bits (693), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 126/164 (76%), Positives = 144/164 (87%)
Query: 14 VERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGEPVGEVRAVSDMHQ 73
VERNIDLVYGGGS+GLMGL+SQAV+DGGRHVLG+IPK+L PREITGE +GEV VS MHQ
Sbjct: 37 VERNIDLVYGGGSVGLMGLISQAVHDGGRHVLGIIPKSLAPREITGESIGEVITVSTMHQ 96
Query: 74 RKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKA 133
RKAEM RQADAFIALPGGYGT EELLEVITW+QLGIH KPVGLLNVDG+Y+SLL+FIDKA
Sbjct: 97 RKAEMGRQADAFIALPGGYGTFEELLEVITWSQLGIHTKPVGLLNVDGFYDSLLTFIDKA 156
Query: 134 VDEGFITPSARHIIVSAPTAQELMSKLEEYEPRHSGVASKLTWE 177
VDEGF++ +AR IIVSAP A +L+ LEEY P+H SK+ W+
Sbjct: 157 VDEGFVSSTARRIIVSAPNAPQLLQLLEEYVPKHDDFVSKMVWD 200
>AT4G35190.1 | Symbols: | unknown protein | chr4:16746724-16748090
FORWARD
Length = 228
Score = 265 bits (677), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 125/168 (74%), Positives = 145/168 (86%)
Query: 14 VERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGEPVGEVRAVSDMHQ 73
V R ++LVYGGGSIGLMGLVSQAV++ G HVLG+IP+TLM +EITGE GEV AV+DMH+
Sbjct: 37 VTRRLNLVYGGGSIGLMGLVSQAVHEAGGHVLGIIPRTLMDKEITGETYGEVIAVADMHE 96
Query: 74 RKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKA 133
RKAEMAR +D FIALPGGYGTLEELLEVI WAQLGIHDKPVGLLNVDGYYN LL+FIDKA
Sbjct: 97 RKAEMARHSDCFIALPGGYGTLEELLEVIAWAQLGIHDKPVGLLNVDGYYNYLLTFIDKA 156
Query: 134 VDEGFITPSARHIIVSAPTAQELMSKLEEYEPRHSGVASKLTWEMEQQ 181
VD+GFI PS RHI VSAP A+EL+ KLE Y+P + GV +K WE+E++
Sbjct: 157 VDDGFIKPSQRHIFVSAPNAKELVQKLEAYKPVNDGVIAKSRWEVEKK 204
>AT5G11950.2 | Symbols: | protein homodimerization |
chr5:3855072-3856815 FORWARD
Length = 216
Score = 251 bits (640), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 117/167 (70%), Positives = 144/167 (86%)
Query: 14 VERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGEPVGEVRAVSDMHQ 73
V+R IDLVYGGGS+GLMGL+S+ VY+GG HVLG+IPK LMP EI+GE VG+VR V+DMH+
Sbjct: 38 VKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEISGETVGDVRVVADMHE 97
Query: 74 RKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKA 133
RKA MA++A+AFIALPGGYGT+EELLE+ITW+QLGIH K VGLLNVDGYYN+LL+ D
Sbjct: 98 RKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTG 157
Query: 134 VDEGFITPSARHIIVSAPTAQELMSKLEEYEPRHSGVASKLTWEMEQ 180
V+EGFI P AR+I+VSAPTA+ELM K+EEY P H VAS +W++E+
Sbjct: 158 VEEGFIKPGARNIVVSAPTAKELMEKMEEYTPSHMHVASHESWKVEE 204
>AT5G11950.1 | Symbols: | protein homodimerization |
chr5:3855072-3856815 FORWARD
Length = 216
Score = 251 bits (640), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 117/167 (70%), Positives = 144/167 (86%)
Query: 14 VERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGEPVGEVRAVSDMHQ 73
V+R IDLVYGGGS+GLMGL+S+ VY+GG HVLG+IPK LMP EI+GE VG+VR V+DMH+
Sbjct: 38 VKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEISGETVGDVRVVADMHE 97
Query: 74 RKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKA 133
RKA MA++A+AFIALPGGYGT+EELLE+ITW+QLGIH K VGLLNVDGYYN+LL+ D
Sbjct: 98 RKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTG 157
Query: 134 VDEGFITPSARHIIVSAPTAQELMSKLEEYEPRHSGVASKLTWEMEQ 180
V+EGFI P AR+I+VSAPTA+ELM K+EEY P H VAS +W++E+
Sbjct: 158 VEEGFIKPGARNIVVSAPTAKELMEKMEEYTPSHMHVASHESWKVEE 204
>AT2G35990.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 15 plant
structures; EXPRESSED DURING: 8 growth stages; CONTAINS
InterPro DOMAIN/s: Conserved hypothetical protein
CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana
protein match is: carboxy-lyase (TAIR:AT5G06300.1). |
chr2:15114733-15116647 FORWARD
Length = 161
Score = 239 bits (611), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 111/148 (75%), Positives = 128/148 (86%)
Query: 30 MGLVSQAVYDGGRHVLGVIPKTLMPREITGEPVGEVRAVSDMHQRKAEMARQADAFIALP 89
MGL+SQAV+DGGRHVLG+IPK+L PREITGE +GEV VS MHQRKAEM RQADAFIALP
Sbjct: 1 MGLISQAVHDGGRHVLGIIPKSLAPREITGESIGEVITVSTMHQRKAEMGRQADAFIALP 60
Query: 90 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFITPSARHIIVS 149
GGYGT EELLEVITW+QLGIH KPVGLLNVDG+Y+SLL+FIDKAVDEGF++ +AR IIVS
Sbjct: 61 GGYGTFEELLEVITWSQLGIHTKPVGLLNVDGFYDSLLTFIDKAVDEGFVSSTARRIIVS 120
Query: 150 APTAQELMSKLEEYEPRHSGVASKLTWE 177
AP A +L+ LEEY P+H SK+ W+
Sbjct: 121 APNAPQLLQLLEEYVPKHDDFVSKMVWD 148
>AT2G35990.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 15 plant
structures; EXPRESSED DURING: 8 growth stages; CONTAINS
InterPro DOMAIN/s: Conserved hypothetical protein
CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana
protein match is: carboxy-lyase (TAIR:AT5G06300.1); Has
2269 Blast hits to 2268 proteins in 637 species: Archae
- 6; Bacteria - 1228; Metazoa - 8; Fungi - 85; Plants -
183; Viruses - 0; Other Eukaryotes - 759 (source: NCBI
BLink). | chr2:15114733-15116647 FORWARD
Length = 161
Score = 239 bits (611), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 111/148 (75%), Positives = 128/148 (86%)
Query: 30 MGLVSQAVYDGGRHVLGVIPKTLMPREITGEPVGEVRAVSDMHQRKAEMARQADAFIALP 89
MGL+SQAV+DGGRHVLG+IPK+L PREITGE +GEV VS MHQRKAEM RQADAFIALP
Sbjct: 1 MGLISQAVHDGGRHVLGIIPKSLAPREITGESIGEVITVSTMHQRKAEMGRQADAFIALP 60
Query: 90 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFITPSARHIIVS 149
GGYGT EELLEVITW+QLGIH KPVGLLNVDG+Y+SLL+FIDKAVDEGF++ +AR IIVS
Sbjct: 61 GGYGTFEELLEVITWSQLGIHTKPVGLLNVDGFYDSLLTFIDKAVDEGFVSSTARRIIVS 120
Query: 150 APTAQELMSKLEEYEPRHSGVASKLTWE 177
AP A +L+ LEEY P+H SK+ W+
Sbjct: 121 APNAPQLLQLLEEYVPKHDDFVSKMVWD 148
>AT5G03270.1 | Symbols: | unknown protein | chr5:781870-783997
FORWARD
Length = 229
Score = 212 bits (540), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/162 (70%), Positives = 128/162 (79%), Gaps = 17/162 (10%)
Query: 14 VERNIDLVYGGGSIGLMGLVSQAVYDGGR--------------HVLGVIPKTLMPREITG 59
V R IDLVYGGGSIGLMGLVSQAV+DGGR H + V + ++TG
Sbjct: 47 VMRKIDLVYGGGSIGLMGLVSQAVHDGGRHNNNNNGNDDALFCHSVNV---SQTNSKLTG 103
Query: 60 EPVGEVRAVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 119
E VGEV+ V+DMHQRKA MA+ +DAFI LPGGYGTLEELLEVITWAQLGIHDKPVGLLNV
Sbjct: 104 ETVGEVKEVADMHQRKAVMAKHSDAFITLPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 163
Query: 120 DGYYNSLLSFIDKAVDEGFITPSARHIIVSAPTAQELMSKLE 161
DGYY++LL FIDKAV+EGFI P+ARHIIVSAPTA+EL KLE
Sbjct: 164 DGYYDALLLFIDKAVEEGFILPTARHIIVSAPTARELFIKLE 205
>AT5G26140.1 | Symbols: | lysine decarboxylase family protein |
chr5:9130796-9131636 FORWARD
Length = 143
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 83/134 (61%), Positives = 103/134 (76%), Gaps = 1/134 (0%)
Query: 57 ITGEPVGEVRAVSDMHQRKAEMARQADAFIALPGG-YGTLEELLEVITWAQLGIHDKPVG 115
I+GE VGEVR VSDMH+RKA MA++A AFIAL G Y T+EELLE+ITWAQLGIH K VG
Sbjct: 6 ISGETVGEVRIVSDMHERKATMAQEAGAFIALLGERYETMEELLEMITWAQLGIHKKTVG 65
Query: 116 LLNVDGYYNSLLSFIDKAVDEGFITPSARHIIVSAPTAQELMSKLEEYEPRHSGVASKLT 175
LLNVDGYYN+LL+F D V+EGFI A +I+VSAP+A+ELM K+E Y P H +AS +
Sbjct: 66 LLNVDGYYNNLLAFFDTGVEEGFIKQGACNIVVSAPSARELMEKMELYTPSHKYIASHQS 125
Query: 176 WEMEQQLGYTIKSE 189
W++E Y + +E
Sbjct: 126 WKVEPLGDYPLLNE 139