Jatropha Genome Database

JcCA0117501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0117501.10 - phase: 0 
         (100 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30580.1 | Symbols:  | GTP binding | chr1:10831953-10835454 R...   170   2e-43
AT1G56050.1 | Symbols:  | GTP-binding protein-related | chr1:209...    70   2e-13

>AT1G30580.1 | Symbols:  | GTP binding | chr1:10831953-10835454
          REVERSE
          Length = 394

 Score =  170 bits (430), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 76/86 (88%), Positives = 78/86 (90%)

Query: 1  MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLSIPAENFPFCTIE 60
          MPPKA      P ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLSIPAENFPFCTIE
Sbjct: 1  MPPKAKAKDAGPVERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLSIPAENFPFCTIE 60

Query: 61 PNEARVNIPDERFEWLCQLYKPKSEV 86
          PNEARVNIPDERF+WLCQ YKPKSE+
Sbjct: 61 PNEARVNIPDERFDWLCQTYKPKSEI 86


>AT1G56050.1 | Symbols:  | GTP-binding protein-related |
           chr1:20963793-20966181 FORWARD
          Length = 421

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/67 (53%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 14  ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL-SIPAENFPFCTIEPNEARVNIPDER 72
           +R    + S  LK GIVGLPNVGKSTLFN + +     A NFPFCTIEPN   V +PD R
Sbjct: 43  KRCFSSKVSMSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSR 102

Query: 73  FEWLCQL 79
            + L +L
Sbjct: 103 LQVLSKL 109