Jatropha Genome Database

JcCA0116381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0116381.10 - phase: 1 /partial
         (196 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G31810.3 | Symbols:  | acetolactate synthase small subunit, p...   292   1e-79
AT2G31810.1 | Symbols:  | acetolactate synthase small subunit, p...   292   1e-79
AT2G31810.2 | Symbols:  | acetolactate synthase small subunit, p...   285   9e-78
AT5G16290.2 | Symbols:  | acetolactate synthase small subunit, p...   254   2e-68
AT5G16290.1 | Symbols:  | acetolactate synthase small subunit, p...   254   2e-68

>AT2G31810.3 | Symbols:  | acetolactate synthase small subunit,
           putative | chr2:13524271-13528246 FORWARD
          Length = 469

 Score =  292 bits (747), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 140/190 (73%), Positives = 161/190 (84%)

Query: 1   VTGDPGKMVAVQRNLKKFGIREIARTGKIALRREKMGEFAPFWRFSAASYPDLGEIRPDD 60
           VTGDPGKM+AV+RNLKKF IREI RTGKIALRREKMG  APFWRFSAASYPDL E  P  
Sbjct: 206 VTGDPGKMIAVERNLKKFQIREIVRTGKIALRREKMGATAPFWRFSAASYPDLKEQAPVS 265

Query: 61  APLGSKCRVVRGEDDTSVGGDVYPVEPSDDFKVAQVLDAHWGVLNEDDTTGLRSHTLSML 120
               SK   +  + +TS GGDVYPVEP  D KV ++LDAHWG+L ++DT+GLRSHTLS+L
Sbjct: 266 VLRSSKKGAIVPQKETSAGGDVYPVEPFFDPKVHRILDAHWGLLTDEDTSGLRSHTLSLL 325

Query: 121 VNDAPGVLNIVTGVFARRGYNIQSLAVGHSETEGISRITTVVPGTDESISKLVQQLYKLV 180
           VND PGVLNIVTGVFARRGYNIQSLAVGH+ET+GISRITTV+P TDES+SKLVQQLYKLV
Sbjct: 326 VNDIPGVLNIVTGVFARRGYNIQSLAVGHAETKGISRITTVIPATDESVSKLVQQLYKLV 385

Query: 181 ELHEVRNFSN 190
           ++HEV + ++
Sbjct: 386 DVHEVHDLTH 395



 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 57/82 (69%), Gaps = 2/82 (2%)

Query: 110 TGLRSHTLSMLVNDAPGVLNIVTGVFARRGYNIQSLAVGHSETEGISRITTVVPGTDESI 169
           + +R HT+S+ V D  G++N + GVFARRGYNI+SLAVG +  + +   T VV GT+  +
Sbjct: 82  SKVRKHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNRDKAL--FTIVVCGTERVL 139

Query: 170 SKLVQQLYKLVELHEVRNFSNQ 191
            ++++QL KLV + +V + S++
Sbjct: 140 QQVIEQLQKLVNVLKVEDISSE 161


>AT2G31810.1 | Symbols:  | acetolactate synthase small subunit,
           putative | chr2:13524271-13528246 FORWARD
          Length = 491

 Score =  292 bits (747), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 140/190 (73%), Positives = 161/190 (84%)

Query: 1   VTGDPGKMVAVQRNLKKFGIREIARTGKIALRREKMGEFAPFWRFSAASYPDLGEIRPDD 60
           VTGDPGKM+AV+RNLKKF IREI RTGKIALRREKMG  APFWRFSAASYPDL E  P  
Sbjct: 206 VTGDPGKMIAVERNLKKFQIREIVRTGKIALRREKMGATAPFWRFSAASYPDLKEQAPVS 265

Query: 61  APLGSKCRVVRGEDDTSVGGDVYPVEPSDDFKVAQVLDAHWGVLNEDDTTGLRSHTLSML 120
               SK   +  + +TS GGDVYPVEP  D KV ++LDAHWG+L ++DT+GLRSHTLS+L
Sbjct: 266 VLRSSKKGAIVPQKETSAGGDVYPVEPFFDPKVHRILDAHWGLLTDEDTSGLRSHTLSLL 325

Query: 121 VNDAPGVLNIVTGVFARRGYNIQSLAVGHSETEGISRITTVVPGTDESISKLVQQLYKLV 180
           VND PGVLNIVTGVFARRGYNIQSLAVGH+ET+GISRITTV+P TDES+SKLVQQLYKLV
Sbjct: 326 VNDIPGVLNIVTGVFARRGYNIQSLAVGHAETKGISRITTVIPATDESVSKLVQQLYKLV 385

Query: 181 ELHEVRNFSN 190
           ++HEV + ++
Sbjct: 386 DVHEVHDLTH 395



 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 57/82 (69%), Gaps = 2/82 (2%)

Query: 110 TGLRSHTLSMLVNDAPGVLNIVTGVFARRGYNIQSLAVGHSETEGISRITTVVPGTDESI 169
           + +R HT+S+ V D  G++N + GVFARRGYNI+SLAVG +  + +   T VV GT+  +
Sbjct: 82  SKVRKHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNRDKAL--FTIVVCGTERVL 139

Query: 170 SKLVQQLYKLVELHEVRNFSNQ 191
            ++++QL KLV + +V + S++
Sbjct: 140 QQVIEQLQKLVNVLKVEDISSE 161


>AT2G31810.2 | Symbols:  | acetolactate synthase small subunit,
           putative | chr2:13524419-13528246 FORWARD
          Length = 421

 Score =  285 bits (730), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 139/191 (72%), Positives = 161/191 (84%), Gaps = 1/191 (0%)

Query: 1   VTGDPGKMVAVQRNLKKFGIREIARTGKIALRREKMGEFAPFWRFSAASYPDLGEIRPDD 60
           VTGDPGKM+AV+RNLKKF IREI RTGKIALRREKMG  APFWRFSAASYPDL E  P  
Sbjct: 135 VTGDPGKMIAVERNLKKFQIREIVRTGKIALRREKMGATAPFWRFSAASYPDLKEQAPVS 194

Query: 61  APLGSKCRVVRGEDDTSVGGDVYPVEPSDDFKVAQVLDAHWGVLNEDDTTGLRSHTLSML 120
               SK   +  + +TS GGDVYPVEP  D KV ++LDAHWG+L ++DT+GLRSHTLS+L
Sbjct: 195 VLRSSKKGAIVPQKETSAGGDVYPVEPFFDPKVHRILDAHWGLLTDEDTSGLRSHTLSLL 254

Query: 121 VNDAPGVLNIVTGVFARRGYNIQS-LAVGHSETEGISRITTVVPGTDESISKLVQQLYKL 179
           VND PGVLNIVTGVFARRGYNIQ+ LAVGH+ET+GISRITTV+P TDES+SKLVQQLYKL
Sbjct: 255 VNDIPGVLNIVTGVFARRGYNIQAYLAVGHAETKGISRITTVIPATDESVSKLVQQLYKL 314

Query: 180 VELHEVRNFSN 190
           V++HEV + ++
Sbjct: 315 VDVHEVHDLTH 325



 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 41/58 (70%), Gaps = 2/58 (3%)

Query: 134 VFARRGYNIQSLAVGHSETEGISRITTVVPGTDESISKLVQQLYKLVELHEVRNFSNQ 191
           VFARRGYNI+SLAVG +  + +   T VV GT+  + ++++QL KLV + +V + S++
Sbjct: 35  VFARRGYNIESLAVGLNRDKAL--FTIVVCGTERVLQQVIEQLQKLVNVLKVEDISSE 90


>AT5G16290.2 | Symbols:  | acetolactate synthase small subunit,
           putative | chr5:5333874-5337387 FORWARD
          Length = 477

 Score =  254 bits (649), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 122/190 (64%), Positives = 152/190 (80%), Gaps = 2/190 (1%)

Query: 1   VTGDPGKMVAVQRNLKKFGIREIARTGKIALRREKMGEFAPFWRFSAASYPDLGEIRPDD 60
           VTGDPGKMVA+  NL+KFGI+EIARTGKIALRREKMGE APFWRFSAASYP L +    +
Sbjct: 196 VTGDPGKMVALTTNLEKFGIKEIARTGKIALRREKMGETAPFWRFSAASYPHLVKESSHE 255

Query: 61  APLGSKCRVVRGEDDTSVGGDVYPVEPSDDFKVAQVLDAHWGVLNEDDTTGLRSHTLSML 120
                    + G  + S GGDVYPVEP +DFK   VLDAHWG++ ++D++GLRSHTLS+L
Sbjct: 256 TVAEKTKLALTGNGNASSGGDVYPVEPYNDFK--PVLDAHWGMVYDEDSSGLRSHTLSLL 313

Query: 121 VNDAPGVLNIVTGVFARRGYNIQSLAVGHSETEGISRITTVVPGTDESISKLVQQLYKLV 180
           V + PGVLN++TG  +RRGYNIQSLAVG +E EG+SRITTV+PGTDE+I KLV+QL KL+
Sbjct: 314 VANVPGVLNLITGAISRRGYNIQSLAVGPAEKEGLSRITTVIPGTDENIDKLVRQLQKLI 373

Query: 181 ELHEVRNFSN 190
           +L E++N ++
Sbjct: 374 DLQEIQNITH 383



 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 57/80 (71%), Gaps = 2/80 (2%)

Query: 112 LRSHTLSMLVNDAPGVLNIVTGVFARRGYNIQSLAVGHSETEGISRITTVVPGTDESISK 171
           +R HT+S+ V D  G++N + GVFARRGYNI+SLAVG +E + +   T VV GTD+ + +
Sbjct: 74  VRRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNEDKAL--FTIVVLGTDKVLQQ 131

Query: 172 LVQQLYKLVELHEVRNFSNQ 191
           +V+QL KLV + +V + S +
Sbjct: 132 VVEQLNKLVNVIKVEDLSKE 151


>AT5G16290.1 | Symbols:  | acetolactate synthase small subunit,
           putative | chr5:5333874-5337387 FORWARD
          Length = 477

 Score =  254 bits (649), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 122/190 (64%), Positives = 152/190 (80%), Gaps = 2/190 (1%)

Query: 1   VTGDPGKMVAVQRNLKKFGIREIARTGKIALRREKMGEFAPFWRFSAASYPDLGEIRPDD 60
           VTGDPGKMVA+  NL+KFGI+EIARTGKIALRREKMGE APFWRFSAASYP L +    +
Sbjct: 196 VTGDPGKMVALTTNLEKFGIKEIARTGKIALRREKMGETAPFWRFSAASYPHLVKESSHE 255

Query: 61  APLGSKCRVVRGEDDTSVGGDVYPVEPSDDFKVAQVLDAHWGVLNEDDTTGLRSHTLSML 120
                    + G  + S GGDVYPVEP +DFK   VLDAHWG++ ++D++GLRSHTLS+L
Sbjct: 256 TVAEKTKLALTGNGNASSGGDVYPVEPYNDFK--PVLDAHWGMVYDEDSSGLRSHTLSLL 313

Query: 121 VNDAPGVLNIVTGVFARRGYNIQSLAVGHSETEGISRITTVVPGTDESISKLVQQLYKLV 180
           V + PGVLN++TG  +RRGYNIQSLAVG +E EG+SRITTV+PGTDE+I KLV+QL KL+
Sbjct: 314 VANVPGVLNLITGAISRRGYNIQSLAVGPAEKEGLSRITTVIPGTDENIDKLVRQLQKLI 373

Query: 181 ELHEVRNFSN 190
           +L E++N ++
Sbjct: 374 DLQEIQNITH 383



 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 57/80 (71%), Gaps = 2/80 (2%)

Query: 112 LRSHTLSMLVNDAPGVLNIVTGVFARRGYNIQSLAVGHSETEGISRITTVVPGTDESISK 171
           +R HT+S+ V D  G++N + GVFARRGYNI+SLAVG +E + +   T VV GTD+ + +
Sbjct: 74  VRRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNEDKAL--FTIVVLGTDKVLQQ 131

Query: 172 LVQQLYKLVELHEVRNFSNQ 191
           +V+QL KLV + +V + S +
Sbjct: 132 VVEQLNKLVNVIKVEDLSKE 151