Jatropha Genome Database

JcCA0116311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0116311.10 + phase: 0 /partial
         (364 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14700.1 | Symbols: ATORC1A, ORC1A | ORC1A (ORIGIN RECOGNITIO...   489   e-139
AT4G12620.1 | Symbols: ORC1B, ATORC1B, UNE13 | ORC1B (ORIGIN OF ...   468   e-132
AT1G07270.1 | Symbols:  | cell division control protein CDC6b, p...   100   1e-21
AT2G29680.2 | Symbols: CDC6, ATCDC6 | CDC6 (CELL DIVISION CONTRO...    92   5e-19
AT2G29680.1 | Symbols: CDC6, ATCDC6 | CDC6 (CELL DIVISION CONTRO...    76   4e-14

>AT4G14700.1 | Symbols: ATORC1A, ORC1A | ORC1A (ORIGIN RECOGNITION
           COMPLEX 1); DNA binding / double-stranded methylated DNA
           binding | chr4:8422236-8424665 FORWARD
          Length = 809

 Score =  489 bits (1260), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 242/359 (67%), Positives = 288/359 (80%), Gaps = 12/359 (3%)

Query: 1   MESIIRRCSVMNPKEYAKASNEGDDVFLCEYEYDIHWHTFKRLAEVDNCXXXXXXXXXXX 60
           ME ++R C V  PKE++KASN+GDDVFLCEYEYD+HW +FKR+AE+ +            
Sbjct: 298 MECVLRHCFVKCPKEFSKASNDGDDVFLCEYEYDVHWGSFKRVAELAD-----GDEDSDQ 352

Query: 61  XWNSSKDAESD--TDEDIEYEEESVKNLQAKASSTHVLAANLRKGQFFGLQRIGVKRIPE 118
            WN  K+ E D   +E    +EESV+ +    S +    AN RKG+FFGL+++G+KRIPE
Sbjct: 353 EWNGRKEEEIDYSDEEIEFDDEESVRGV----SKSKRGGANSRKGRFFGLEKVGMKRIPE 408

Query: 119 HVRCHXXXXXXXXXXXXXXXXXPKSQPCRNKEMEEITAFIKGAIYDDQCLGRCLYIHGVP 178
           HVRCH                 PKS PCR+KEMEEITAFIKG+I DDQCLGRC+YIHGVP
Sbjct: 409 HVRCHKQSELEKAKATLLLATRPKSLPCRSKEMEEITAFIKGSISDDQCLGRCMYIHGVP 468

Query: 179 GTGKTMSVLAVMRNLKSEVDAGNMRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKK 238
           GTGKT+SVL+VM+NLK+EV+AG++ PYCFVE+NGLKLASPENIY VIYE LSGHRV WKK
Sbjct: 469 GTGKTISVLSVMKNLKAEVEAGSVSPYCFVEINGLKLASPENIYSVIYEGLSGHRVGWKK 528

Query: 239 ALHLLNERFSDGKK-GKGDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGI 297
           AL  LNERF++GKK GK +++PCILLIDELD+LVTRNQSVLYNILDWPTKP+SKL+V+GI
Sbjct: 529 ALQSLNERFAEGKKIGKENEKPCILLIDELDVLVTRNQSVLYNILDWPTKPNSKLVVLGI 588

Query: 298 ANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGIDVFEKQAIEFASRKV 356
           ANTMDLPEKLLPRISSRMGIQRLCFGPYN++QLQEIIS+RL+GI+ FEK AIEFASRKV
Sbjct: 589 ANTMDLPEKLLPRISSRMGIQRLCFGPYNHRQLQEIISTRLEGINAFEKTAIEFASRKV 647


>AT4G12620.1 | Symbols: ORC1B, ATORC1B, UNE13 | ORC1B (ORIGIN OF
           REPLICATION COMPLEX 1B); DNA binding / double-stranded
           methylated DNA binding / protein binding |
           chr4:7459812-7462253 REVERSE
          Length = 813

 Score =  468 bits (1203), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/357 (66%), Positives = 283/357 (79%), Gaps = 6/357 (1%)

Query: 1   MESIIRRCSVMNPKEYAKASNEGDDVFLCEYEYDIHWHTFKRLAEVDNCXXXXXXXXXXX 60
           ME I+R CSV  PKE++KASN+GDDVFLCEYEYD+HW +FKRLAE+ +            
Sbjct: 301 MECILRHCSVKCPKEFSKASNDGDDVFLCEYEYDVHWRSFKRLAELAD-----GDSDSDQ 355

Query: 61  XWNSSKDAESDTDEDIEYEEESVKNLQAKASSTHVLAANLRKGQFFGLQRIGVKRIPEHV 120
            WN  K+ E D  ++    ++ V   +    ++    AN RKG+FFG++++G+K IPEHV
Sbjct: 356 EWNGRKEEEVDDSDEEMELDDEVLKSKRGGLTSARGGANSRKGRFFGVEKVGMKLIPEHV 415

Query: 121 RCHXXXXXXXXXXXXXXXXXPKSQPCRNKEMEEITAFIKGAIYDDQCLGRCLYIHGVPGT 180
           RCH                 PKS PCR+KEMEEIT+FIKG+I DDQCLGRC+YIHGVPGT
Sbjct: 416 RCHKQSELEKAKATLLLATRPKSLPCRSKEMEEITSFIKGSISDDQCLGRCMYIHGVPGT 475

Query: 181 GKTMSVLAVMRNLKSEVDAGNMRPYCFVEVNGLKLASPENIYRVIYEALSGHRVSWKKAL 240
           GKT+SVL+VM+NLK+EV+ G++ PYCFVE+NGLKLASPENIY VIYEALSGHRV WKKAL
Sbjct: 476 GKTISVLSVMKNLKAEVEEGSVSPYCFVEINGLKLASPENIYSVIYEALSGHRVGWKKAL 535

Query: 241 HLLNERFSDGKK-GKGDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIAN 299
             LNERF++GK+ GK D++PCILLIDELDLLVTRNQSVLYNILDWPTKP+SKL+V+GIAN
Sbjct: 536 QCLNERFAEGKRIGKEDEKPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLVVLGIAN 595

Query: 300 TMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGIDVFEKQAIEFASRKV 356
           TMDLPEKLLPRISSRMGIQRLCFGPYN+ QLQEIIS+RL GID FEK AIEFASRKV
Sbjct: 596 TMDLPEKLLPRISSRMGIQRLCFGPYNHTQLQEIISTRLNGIDAFEKTAIEFASRKV 652


>AT1G07270.1 | Symbols:  | cell division control protein CDC6b,
           putative (CDC6b) | chr1:2229757-2232897 REVERSE
          Length = 505

 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 115/221 (52%), Gaps = 8/221 (3%)

Query: 141 PKSQPCRNKEMEEITAFIKGAIYDDQCLGRCLYIHGVPGTGKTMSVLAVMRNLKSEVDAG 200
           P +  CR  E   I  F+KG I  DQ     LYI G PGTGK++S+  V++ +       
Sbjct: 123 PSTILCREDEQIRIFEFVKGCI--DQQKAGSLYICGCPGTGKSLSMEKVVQQVGDWSTQA 180

Query: 201 NMRPYCFVEVNGLKLASPENIY-RVIYEALSGHRVSWKKA-LHLLNERFSDGKKGKGDDR 258
            + P   + VN   L+   +I+ +++ E   G   +   + L  L   FS  K+     R
Sbjct: 181 GLPPVDTLSVNCTSLSKTTDIFSKILGEIKPGKNANTNSSPLQHLQNLFSQ-KQESSSSR 239

Query: 259 PCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISS-RMGI 317
             +++ DE+D L+T+++ VLY++    T P S+ I+IG+AN +DL ++ LP++ S     
Sbjct: 240 MMLIIADEMDYLITKDRGVLYDLFMLTTLPFSRCILIGVANAIDLADRFLPKLKSLNCKP 299

Query: 318 QRLCFGPYNYQQLQEIISSRLKGID--VFEKQAIEFASRKV 356
             + F  Y+  Q+  I+  RL+ +    F+ +A+E  +RKV
Sbjct: 300 MVITFRAYSKDQILRILQERLRVLSYVAFQPKALELCARKV 340


>AT2G29680.2 | Symbols: CDC6, ATCDC6 | CDC6 (CELL DIVISION CONTROL
           6) | chr2:12689586-12692854 FORWARD
          Length = 508

 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 22/228 (9%)

Query: 141 PKSQPCRNKEMEEITAFIKGAIYDDQCLGRCLYIHGVPGTGKTMSVLAVMRNLKSEVDAG 200
           P +  CR  E   +  F+KG +  +Q     LYI G PGTGK++S+  V   L++E  A 
Sbjct: 126 PSTVVCREDEQRRVFEFVKGCM--EQKKAGSLYICGCPGTGKSLSMEKV--RLQAEEWAK 181

Query: 201 NMRPYC--FVEVNGLKLASPENIYRVIYEALSGHRVSWKKA------LHLLNERFSDGKK 252
               +C   V VN   L    +I+  I     G+  S KKA      L  L   FS  K+
Sbjct: 182 QAGLHCPETVSVNCTSLTKSTDIFSKIL----GNYESGKKANGSFSPLQQLQRLFSQ-KQ 236

Query: 253 GKGDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRIS 312
            +   +  +++ DE+D L+TR++ VL+ +    T P S+ I+IG+AN +DL ++ LP++ 
Sbjct: 237 QQSRSKMMLIIADEMDYLITRDRGVLHELFMLTTLPLSRCILIGVANAIDLADRFLPKLK 296

Query: 313 SRMGIQRL--CFGPYNYQQLQEIISSRLKGID--VFEKQAIEFASRKV 356
           S +  + L   F  Y+  Q+  I+  RL  +    F+  A+E  +RKV
Sbjct: 297 S-LNCKPLVVTFRAYSKDQILRILQERLVALPFVAFQSNALEICARKV 343


>AT2G29680.1 | Symbols: CDC6, ATCDC6 | CDC6 (CELL DIVISION CONTROL
           6) | chr2:12689586-12692854 FORWARD
          Length = 539

 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 116/259 (44%), Gaps = 53/259 (20%)

Query: 141 PKSQPCRNKEMEEITAFIKGAIYDDQCLGRCLYIHGVPGTGKTMSVLAVMRNLKSEVDAG 200
           P +  CR  E   +  F+KG +  +Q     LYI G PGTGK++S+  V   L++E  A 
Sbjct: 126 PSTVVCREDEQRRVFEFVKGCM--EQKKAGSLYICGCPGTGKSLSMEKV--RLQAEEWAK 181

Query: 201 NMRPYC--FVEVNGLKLASPENIYRVIYEALSGHRVSWKKA------LHLLNERFSDGKK 252
               +C   V VN   L    +I+  I     G+  S KKA      L  L   FS  K+
Sbjct: 182 QAGLHCPETVSVNCTSLTKSTDIFSKIL----GNYESGKKANGSFSPLQQLQRLFSQ-KQ 236

Query: 253 GKGDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVI----------------- 295
            +   +  +++ DE+D L+TR++ VL+ +    T P S+ I+I                 
Sbjct: 237 QQSRSKMMLIIADEMDYLITRDRGVLHELFMLTTLPLSRCILIGTVFCVINVHFLKSVSY 296

Query: 296 --------------GIANTMDLPEKLLPRISSRMGIQRL--CFGPYNYQQLQEIISSRLK 339
                         G+AN +DL ++ LP++ S +  + L   F  Y+  Q+  I+  RL 
Sbjct: 297 GQTSFKFKVRICPPGVANAIDLADRFLPKLKS-LNCKPLVVTFRAYSKDQILRILQERLV 355

Query: 340 GID--VFEKQAIEFASRKV 356
            +    F+  A+E  +RKV
Sbjct: 356 ALPFVAFQSNALEICARKV 374