Jatropha Genome Database

JcCA0109511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0109511.10 + phase: 0 
         (323 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11950.1 | Symbols:  | prenyltransferase/ zinc ion binding | ...   426   e-119

>AT3G11950.1 | Symbols:  | prenyltransferase/ zinc ion binding |
           chr3:3783273-3785098 REVERSE
          Length = 572

 Score =  426 bits (1094), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 192/291 (65%), Positives = 236/291 (81%)

Query: 21  PTFHCDLYDADLVRRIAQVFLPGLSAACVDNTTGGIFRSPASVAVEMRKEMIEYLTMRSE 80
           P+FHCDLYD  +V +IAQVFLPGL+ ACVDNTTG IFRSP SVA ++RKEMIEYLT RSE
Sbjct: 19  PSFHCDLYDTQVVHKIAQVFLPGLATACVDNTTGDIFRSPGSVAADIRKEMIEYLTRRSE 78

Query: 81  TFVAETIILEGGQNEEISDHPYDIISDFVDDFASSKRNFFSRVQGWILSEKREDKIDDFV 140
           TFVAE I+L+GG   E S  P+DIISDF+DDFA+SKRN FSRV GW+LSE+RED IDDF 
Sbjct: 79  TFVAEHIVLQGGSEIEASHDPFDIISDFIDDFATSKRNLFSRVSGWMLSERREDNIDDFA 138

Query: 141 QEMEVNGFWLSDRREVIAQNLVKNVDYKNIFYCDKKFYTAEELAEHVINCDFRTVNCTND 200
           QEME++GFWL+D RE IAQ L+KNVD+K+  +C+ KF T  ELAEH +NC +RT+NC N+
Sbjct: 139 QEMEISGFWLTDHREGIAQTLLKNVDFKSSAHCEMKFQTEGELAEHAMNCGYRTMNCENE 198

Query: 201 GCVSFFCASQLEKHDSTCPFKIIPCEQKCSDHIMRREMDRHCITVCPMKLVNCPSMLWVV 260
           GC + FCA+Q+E HDS CPFKIIPCEQ CS+ IMRR+MDRHCITVCPMKLVNCP      
Sbjct: 199 GCTAVFCANQMENHDSVCPFKIIPCEQNCSESIMRRDMDRHCITVCPMKLVNCPFHSVGC 258

Query: 261 PAAITRSMIQQHCLDDLNSHLVYALKNIHKEASEEDLKDRLDQIMQVSQRL 311
            + + +  +QQH LD+++SHL+Y L++I+KEAS +DLK R +QI Q+S RL
Sbjct: 259 LSDVHQCEVQQHHLDNVSSHLMYILRSIYKEASLDDLKPRAEQIQQLSTRL 309