Jatropha Genome Database

JcCA0109411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0109411.10 + phase: 0 /partial
         (90 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44050.1 | Symbols: COS1 | COS1 (COI1 SUPPRESSOR1); 6,7-dimet...   164   1e-41

>AT2G44050.1 | Symbols: COS1 | COS1 (COI1 SUPPRESSOR1);
           6,7-dimethyl-8-ribityllumazine synthase |
           chr2:18224304-18225917 FORWARD
          Length = 227

 Score =  164 bits (414), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 76/90 (84%), Positives = 86/90 (95%)

Query: 1   VVARFNEIVTKHLLEGALETFKKYSVKEEDVDVVWVPGSFEIGIVAERLGKSGNYHAILC 60
           VVARFNE+VTK LLEGA+ETFKKYSV+EED++V+WVPGSFEIG+VA+ LGKSG +HA+LC
Sbjct: 90  VVARFNEVVTKLLLEGAIETFKKYSVREEDIEVIWVPGSFEIGVVAQNLGKSGKFHAVLC 149

Query: 61  IGAVIRGDTTHYDAVANSAASGVLSAGINS 90
           IGAVIRGDTTHYDAVANSAASGVLSA INS
Sbjct: 150 IGAVIRGDTTHYDAVANSAASGVLSASINS 179