Jatropha Genome Database

JcCA0098341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0098341.10 + phase: 1 /pseudo/partial
         (121 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G18950.1 | Symbols: HPT1, TPT1, ATHPT, VTE2 | HPT1 (HOMOGENTI...   149   5e-37
AT3G11945.1 | Symbols: ATHST | homogentisate farnesyltransferase...    47   3e-06
AT3G11945.2 | Symbols: ATHST | homogentisate farnesyltransferase...    45   9e-06

>AT2G18950.1 | Symbols: HPT1, TPT1, ATHPT, VTE2 | HPT1
           (HOMOGENTISATE PHYTYLTRANSFERASE 1); homogentisate
           phytyltransferase/ prenyltransferase |
           chr2:8207491-8210047 FORWARD
          Length = 393

 Score =  149 bits (375), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 68/93 (73%), Positives = 79/93 (84%)

Query: 23  KDIPDIEGDKIFGIQSFTVRLGQERVFWICISLLEIAYGVAILVGAASSYTWSKCVTVVG 82
           KDIPDIEGDKIFGI+SF+V LGQ+RVFW C++LL++AY VAILVGA S + WSK ++VVG
Sbjct: 289 KDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFIWSKVISVVG 348

Query: 83  HAILAAILWNRAKSVDLKSKAAITSCYMFIWKV 115
           H ILA  LW RAKSVDL SK  ITSCYMFIWK+
Sbjct: 349 HVILATTLWARAKSVDLSSKTEITSCYMFIWKL 381


>AT3G11945.1 | Symbols: ATHST | homogentisate farnesyltransferase/
           homogentisate geranylgeranyltransferase/ homogentisate
           solanesyltransferase | chr3:3780041-3782880 REVERSE
          Length = 386

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 23  KDIPDIEGDKIFGIQSFTVRLGQERVFWICISLLEIAYGVAILVGAASSYTWSKCVTVVG 82
           KD+PD+EGD+ F I +   +LG   + ++   LL + Y  AI +       +   + +  
Sbjct: 281 KDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPA 340

Query: 83  HAILAAIL----WNRAKSVDLKSKAAITSCYMFIWKV 115
           H ILA+ L    W   K+    +K AI+  Y FIW +
Sbjct: 341 HVILASGLIFQTWVLEKAN--YTKEAISGYYRFIWNL 375


>AT3G11945.2 | Symbols: ATHST | homogentisate farnesyltransferase/
           homogentisate geranylgeranyltransferase/ homogentisate
           solanesyltransferase | chr3:3780041-3782880 REVERSE
          Length = 393

 Score = 45.1 bits (105), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 23  KDIPDIEGDKIFGIQSFTVRLGQERVFWICISLLEIAYGVAILVGAASSYTWSKCVTVVG 82
           KD+PD+EGD+ F I +   +LG   + ++   LL + Y  AI +       +   + +  
Sbjct: 288 KDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPA 347

Query: 83  HAILAAIL----WNRAKSVDLKSKAAITSCYMFIWKV 115
           H ILA+ L    W   K+    +K AI+  Y FIW +
Sbjct: 348 HVILASGLIFQTWVLEKAN--YTKEAISGYYRFIWNL 382