Jatropha Genome Database

JcCA0098081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0098081.10 - phase: 0 /partial
         (129 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78580.1 | Symbols: ATTPS1, TPS1 | ATTPS1 (TREHALOSE-6-PHOSPH...    84   2e-17
AT4G27550.1 | Symbols: ATTPS4, TPS4 | ATTPS4; alpha,alpha-trehal...    52   1e-07
AT1G17000.1 | Symbols: ATTPS3, TPS3 | ATTPS3; alpha,alpha-trehal...    50   3e-07

>AT1G78580.1 | Symbols: ATTPS1, TPS1 | ATTPS1 (TREHALOSE-6-PHOSPHATE
           SYNTHASE); alpha,alpha-trehalose-phosphate synthase
           (UDP-forming)/ transferase, transferring glycosyl groups
           | chr1:29552495-29557482 REVERSE
          Length = 942

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 77/139 (55%), Gaps = 17/139 (12%)

Query: 4   RDEDIYTFFEPELPNEPPAKARCRSLDPVTSHLP---KVPCSRSRSKAHLNKQRSMSTLE 60
           +DED+YTFFEPELP++ PA AR R      +      + P S+S    + +  +S S+  
Sbjct: 800 KDEDVYTFFEPELPSDMPAIARSRPSSDSGAKSSSGDRRPPSKSTHNNNKSGSKSSSSSN 859

Query: 61  RNKVGTPAWRPIQHDRIKMHEGS--------------SVLDLKAENYFSCAVSRKRSNAR 106
            N     + R +Q +R      S              +VLDLK ENYFSCAV R R+NAR
Sbjct: 860 SNNNNKSSQRSLQSERKSGSNHSLGNSRRPSPEKISWNVLDLKGENYFSCAVGRTRTNAR 919

Query: 107 YLLGTSDDVVILLKELADS 125
           YLLG+ DDVV  L++LAD+
Sbjct: 920 YLLGSPDDVVCFLEKLADT 938


>AT4G27550.1 | Symbols: ATTPS4, TPS4 | ATTPS4;
           alpha,alpha-trehalose-phosphate synthase (UDP-forming)/
           transferase, transferring glycosyl groups |
           chr4:13755689-13759740 FORWARD
          Length = 795

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 47/119 (39%)

Query: 4   RDEDIYTFFEPELPNEPPAKARCRSLDPVTSHLPKVPCSRSRSKAHLNKQRSMSTLERNK 63
           +DED+YTFFEPEL  +  + +   S  P                               K
Sbjct: 718 KDEDVYTFFEPELTKKAKSLSSSGSDSP------------------------------KK 747

Query: 64  VGTPAWRPIQHDRIKMHEGSSVLDLKAENYFSCAVSRKRSNARYLLGTSDDVVILLKEL 122
           V                  S+++DLK ENYFS A+ +  + ARY L +SDDVV L+ +L
Sbjct: 748 VS-----------------STIVDLKGENYFSVAIGQTHTKARYFLDSSDDVVKLIGKL 789


>AT1G17000.1 | Symbols: ATTPS3, TPS3 | ATTPS3;
           alpha,alpha-trehalose-phosphate synthase (UDP-forming) |
           chr1:5812728-5816662 FORWARD
          Length = 783

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 55/120 (45%), Gaps = 41/120 (34%)

Query: 4   RDEDIYTFFEPELPNEPPAKARCRSLDPVTSHLPKVPCSRSRSKAHLNKQRSMSTLERNK 63
           +DEDIYTFFE E+            L P  SH  +     S S   L K+ S++      
Sbjct: 691 KDEDIYTFFESEI------------LSPKLSH--ETRSKSSSSNHSLEKKVSLN------ 730

Query: 64  VGTPAWRPIQHDRIKMHEGSSVLDLKAENYFSCAVSRKRSNARYLLGTSDDVVILLKELA 123
                                VLDLK ENYFS A+ + R+ ARY++ +S +VV LL +LA
Sbjct: 731 ---------------------VLDLKQENYFSTAIGQARTKARYVVDSSHNVVNLLHKLA 769