Jatropha Genome Database
- JcCA0097961.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0097961.10 + phase: 0 /partial
(411 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G36690.3 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding / nucl... 502 e-142
AT4G36690.2 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding / nucl... 502 e-142
AT4G36690.1 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding / nucl... 502 e-142
AT1G60900.1 | Symbols: | U2 snRNP auxiliary factor large subuni... 490 e-139
AT5G09880.1 | Symbols: | RNA recognition motif (RRM)-containing... 68 1e-11
AT1G71800.1 | Symbols: | cleavage stimulation factor, putative ... 67 2e-11
AT2G18510.1 | Symbols: emb2444 | emb2444 (embryo defective 2444)... 66 5e-11
AT2G33435.1 | Symbols: | RNA recognition motif (RRM)-containing... 64 1e-10
AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,... 64 2e-10
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | RBP31 (31... 60 2e-09
AT3G52380.1 | Symbols: CP33, PDE322 | CP33; RNA binding | chr3:1... 58 1e-08
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 57 2e-08
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 57 2e-08
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 57 2e-08
AT3G13224.2 | Symbols: | RNA recognition motif (RRM)-containing... 57 3e-08
AT4G00830.2 | Symbols: | RNA recognition motif (RRM)-containing... 56 5e-08
AT4G00830.1 | Symbols: | RNA recognition motif (RRM)-containing... 56 5e-08
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 55 1e-07
AT3G13224.1 | Symbols: | RNA recognition motif (RRM)-containing... 55 1e-07
AT3G52150.2 | Symbols: | RNA recognition motif (RRM)-containing... 54 2e-07
AT3G52150.1 | Symbols: | RNA recognition motif (RRM)-containing... 54 2e-07
AT5G40490.1 | Symbols: | RNA recognition motif (RRM)-containing... 54 3e-07
AT1G01080.2 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,... 52 5e-07
AT1G01080.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,... 52 5e-07
AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,... 52 6e-07
AT1G60650.2 | Symbols: | glycine-rich RNA-binding protein, puta... 52 7e-07
AT1G60650.1 | Symbols: | glycine-rich RNA-binding protein, puta... 52 7e-07
AT5G04280.1 | Symbols: | glycine-rich RNA-binding protein | chr... 52 8e-07
AT2G46780.1 | Symbols: | RNA binding / nucleic acid binding / n... 52 8e-07
AT3G26420.1 | Symbols: ATRZ-1A | ATRZ-1A; RNA binding / nucleoti... 52 9e-07
AT4G13850.3 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-RICH RNA-BINDIN... 52 9e-07
AT4G13850.2 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-RICH RNA-BINDIN... 52 9e-07
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | GR-RBP2 (GLYCINE-... 52 9e-07
AT2G33440.1 | Symbols: | splicing factor family protein | chr2:... 51 1e-06
AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-bindi... 51 2e-06
AT5G11412.1 | Symbols: | nucleic acid binding / nucleotide bind... 50 3e-06
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | GR-RBP8; RN... 50 3e-06
AT4G39260.3 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding... 49 4e-06
AT4G39260.2 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding... 49 4e-06
AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,... 49 5e-06
AT4G13850.4 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-RICH RNA-BINDIN... 49 6e-06
>AT4G36690.3 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding / nucleic
acid binding / nucleotide binding |
chr4:17294422-17297609 REVERSE
Length = 565
Score = 502 bits (1293), Expect = e-142, Method: Compositional matrix adjust.
Identities = 250/293 (85%), Positives = 264/293 (90%), Gaps = 1/293 (0%)
Query: 118 KRISGFDMAPPPSAMLXXXXXXXXXXXQIPGTNPAISGMFPNMFPLGTGQQFGALPVMPV 177
+R+SGFDMAPP SAML P T P +GMFPNMFPL TGQ FG L +MP+
Sbjct: 169 QRVSGFDMAPPASAMLAAGAAVTGQVPPAPPTLPG-AGMFPNMFPLPTGQSFGGLSMMPI 227
Query: 178 QAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKK 237
QAMTQQATRHARRVYVGGL PTANEQSVATFFSQVMAA+GGNTAGPGDAVVNVYINHEKK
Sbjct: 228 QAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKK 287
Query: 238 FAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGL 297
FAFVEMRSVEEASNAM+LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQP+P+LNLAAVGL
Sbjct: 288 FAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGL 347
Query: 298 TPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVY 357
TPG++GGLEGPDRIFVGGLPYYFTE+Q+RELLESFG L+GFDLVKDRETGNSKGYAFCVY
Sbjct: 348 TPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVY 407
Query: 358 QDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQENVLLHAQQQIALQ 410
QDLSVTDIACAALNGIKMGDKTLTVRRANQG KPEQENVLLHAQQQIA Q
Sbjct: 408 QDLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQ 460
>AT4G36690.2 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding / nucleic
acid binding / nucleotide binding |
chr4:17294591-17297609 REVERSE
Length = 542
Score = 502 bits (1292), Expect = e-142, Method: Compositional matrix adjust.
Identities = 250/293 (85%), Positives = 264/293 (90%), Gaps = 1/293 (0%)
Query: 118 KRISGFDMAPPPSAMLXXXXXXXXXXXQIPGTNPAISGMFPNMFPLGTGQQFGALPVMPV 177
+R+SGFDMAPP SAML P T P +GMFPNMFPL TGQ FG L +MP+
Sbjct: 169 QRVSGFDMAPPASAMLAAGAAVTGQVPPAPPTLPG-AGMFPNMFPLPTGQSFGGLSMMPI 227
Query: 178 QAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKK 237
QAMTQQATRHARRVYVGGL PTANEQSVATFFSQVMAA+GGNTAGPGDAVVNVYINHEKK
Sbjct: 228 QAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKK 287
Query: 238 FAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGL 297
FAFVEMRSVEEASNAM+LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQP+P+LNLAAVGL
Sbjct: 288 FAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGL 347
Query: 298 TPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVY 357
TPG++GGLEGPDRIFVGGLPYYFTE+Q+RELLESFG L+GFDLVKDRETGNSKGYAFCVY
Sbjct: 348 TPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVY 407
Query: 358 QDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQENVLLHAQQQIALQ 410
QDLSVTDIACAALNGIKMGDKTLTVRRANQG KPEQENVLLHAQQQIA Q
Sbjct: 408 QDLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQ 460
>AT4G36690.1 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding / nucleic
acid binding / nucleotide binding |
chr4:17294139-17297609 REVERSE
Length = 573
Score = 502 bits (1292), Expect = e-142, Method: Compositional matrix adjust.
Identities = 250/293 (85%), Positives = 264/293 (90%), Gaps = 1/293 (0%)
Query: 118 KRISGFDMAPPPSAMLXXXXXXXXXXXQIPGTNPAISGMFPNMFPLGTGQQFGALPVMPV 177
+R+SGFDMAPP SAML P T P +GMFPNMFPL TGQ FG L +MP+
Sbjct: 169 QRVSGFDMAPPASAMLAAGAAVTGQVPPAPPTLPG-AGMFPNMFPLPTGQSFGGLSMMPI 227
Query: 178 QAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKK 237
QAMTQQATRHARRVYVGGL PTANEQSVATFFSQVMAA+GGNTAGPGDAVVNVYINHEKK
Sbjct: 228 QAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKK 287
Query: 238 FAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGL 297
FAFVEMRSVEEASNAM+LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQP+P+LNLAAVGL
Sbjct: 288 FAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGL 347
Query: 298 TPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVY 357
TPG++GGLEGPDRIFVGGLPYYFTE+Q+RELLESFG L+GFDLVKDRETGNSKGYAFCVY
Sbjct: 348 TPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVY 407
Query: 358 QDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQENVLLHAQQQIALQ 410
QDLSVTDIACAALNGIKMGDKTLTVRRANQG KPEQENVLLHAQQQIA Q
Sbjct: 408 QDLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQ 460
>AT1G60900.1 | Symbols: | U2 snRNP auxiliary factor large subunit,
putative | chr1:22424008-22427806 FORWARD
Length = 589
Score = 490 bits (1262), Expect = e-139, Method: Compositional matrix adjust.
Identities = 247/291 (84%), Positives = 256/291 (87%), Gaps = 6/291 (2%)
Query: 122 GFDMAPPPSAMLXXXXXXXXXXXQIPG--TNPAISGMFPNMFPLGTGQQFGALPVMPVQA 179
GFDMAPP ML Q+P T I GMF NMFP+ GQQ GALPV+PVQA
Sbjct: 190 GFDMAPP--DMLAATAVAAAG--QVPSVPTTATIPGMFSNMFPMVPGQQLGALPVLPVQA 245
Query: 180 MTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFA 239
MTQQATRHARRVYVGGLPPTANEQSV+TFFSQVM+AIGGNTAGPGDAVVNVYINHEKKFA
Sbjct: 246 MTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFA 305
Query: 240 FVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTP 299
FVEMRSVEEASNAMALDGII EG PVKVRRP+DYNPSLAATLGPSQPNPNLNL AVGL+
Sbjct: 306 FVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSS 365
Query: 300 GSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQD 359
GS GGLEGPDRIFVGGLPYYFTE QIRELLESFGPLRGF+LVKDRETGNSKGYAFCVYQD
Sbjct: 366 GSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQD 425
Query: 360 LSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQENVLLHAQQQIALQ 410
SVTDIACAALNGIKMGDKTLTVRRA QGA QPKPEQE VLL+AQQQIALQ
Sbjct: 426 PSVTDIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQ 476
>AT5G09880.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:3081646-3085179 REVERSE
Length = 527
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 92/200 (46%), Gaps = 28/200 (14%)
Query: 186 RHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRS 245
R R V+ +P A E+ V FFS+ +++ K ++E
Sbjct: 165 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRL------IMDRNSRRSKGVGYIEFYD 218
Query: 246 VEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGL 305
V A+AL G +F G PV V+ PS+ +LA + N VG T
Sbjct: 219 VMSVPMAIALSGQLFLGQPVMVK-PSEAEKNLAQS----------NSTTVGGT------- 260
Query: 306 EGP-DR-IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVT 363
GP DR ++VG L + +E Q+R++ E+FGP+ L D ETG KG+ F + L +
Sbjct: 261 -GPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHS 319
Query: 364 DIACAALNG-IKMGDKTLTV 382
A ALNG +++ +T+ V
Sbjct: 320 KAAQIALNGKLEIAGRTIKV 339
>AT1G71800.1 | Symbols: | cleavage stimulation factor, putative |
chr1:26999606-27001850 FORWARD
Length = 461
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%)
Query: 311 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 370
+FVG +PY TE Q+RE+ GP+ F LV DRETG KGY FC Y+D A L
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 371 NGIKMGDKTLTV 382
++ + L V
Sbjct: 71 QSYEINGRQLRV 82
>AT2G18510.1 | Symbols: emb2444 | emb2444 (embryo defective 2444);
RNA binding / nucleic acid binding / nucleotide binding
| chr2:8031554-8033517 REVERSE
Length = 363
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 36/197 (18%)
Query: 191 VYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEAS 250
VYVGGL +E+ + F Q + N P D V N++ N + F+E RS E+A
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVV--NVYVPKDRVTNLHQN----YGFIEYRSEEDAD 80
Query: 251 NAM-ALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPD 309
A+ L+ I G P++V + S Q +L++ A
Sbjct: 81 YAIKVLNMIKLHGKPIRVNKAS-------------QDKKSLDVGA--------------- 112
Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGF-DLVKDRETGNSKGYAFCVYQDLSVTDIACA 368
+F+G L E + + +FG + +++D +TGNS+G+ F Y +D A
Sbjct: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE 172
Query: 369 ALNGIKMGDKTLTVRRA 385
++ G + ++ +TV A
Sbjct: 173 SMTGQYLSNRQITVSYA 189
>AT2G33435.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:14166037-14169492 FORWARD
Length = 979
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 55/91 (60%)
Query: 183 QATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVE 242
++TR RR+Y +P +A+E+S+ F+ M + G N + ++ IN EK A VE
Sbjct: 872 ESTRRMRRLYAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISCIINKEKSQALVE 931
Query: 243 MRSVEEASNAMALDGIIFEGAPVKVRRPSDY 273
+ ++AS A++LDG F G+ +K+RRP DY
Sbjct: 932 FLTPQDASAALSLDGCSFAGSNLKIRRPKDY 962
>AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative | chr5:20452677-20453965 REVERSE
Length = 289
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 30/200 (15%)
Query: 190 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEA 249
+++VG LP + Q++A F Q T + + N + + F FV M +VEEA
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQ------AGTVEISEVIYNRDTDQSRGFGFVTMSTVEEA 167
Query: 250 SNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPN--PNLNLAAVGLTPGSAGGLEG 307
A+ F V RR + AA G S+P P + AA
Sbjct: 168 EKAVEK----FNSFEVNGRR---LTVNRAAPRG-SRPERQPRVYDAAF------------ 207
Query: 308 PDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 367
RI+VG LP+ ++ L G + +V DRETG S+G+ F + + ++A
Sbjct: 208 --RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAI 265
Query: 368 AALNGIKMGDKTLTVRRANQ 387
AAL+G + + + V A +
Sbjct: 266 AALDGQNLEGRAIKVNVAEE 285
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | RBP31
(31-KDA RNA BINDING PROTEIN); RNA binding / poly(U)
binding | chr4:12766223-12767952 REVERSE
Length = 329
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 28/199 (14%)
Query: 190 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEA 249
+++VG L N Q++A F Q T + + N + + F FV M SV+EA
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQ------AGTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204
Query: 250 SNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPD 309
A+ K R D N L T+ + P G P A + P
Sbjct: 205 ETAVE-----------KFNR-YDLNGRLL-TVNKAAPR--------GSRPERAPRVYEPA 243
Query: 310 -RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 368
R++VG LP+ ++ +L G + +V DRETG S+G+ F D+ + A +
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAIS 303
Query: 369 ALNGIKMGDKTLTVRRANQ 387
AL+G + + + V A +
Sbjct: 304 ALDGQNLEGRAIRVNVAEE 322
>AT3G52380.1 | Symbols: CP33, PDE322 | CP33; RNA binding |
chr3:19421619-19422855 FORWARD
Length = 329
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 91/222 (40%), Gaps = 36/222 (16%)
Query: 181 TQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEK---- 236
T QA+ R+YVG LP T ++ F G VV+V I ++K
Sbjct: 108 TTQASGEEGRLYVGNLPYTITSSELSQIF------------GEAGTVVDVQIVYDKVTDR 155
Query: 237 --KFAFVEMRSVEEASNAMAL-DGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLN-L 292
F FV M S+EEA AM + + G VKV P P N +
Sbjct: 156 SRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPE-------------VPRGGENEV 202
Query: 293 AAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGY 352
+ + ++ P +++ G L + T +++ + G ++ +R TG S+G+
Sbjct: 203 MRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGF 262
Query: 353 AFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKP 394
F ++ A A +NG+++ + L R N + + KP
Sbjct: 263 GFISFESAENVQSALATMNGVEVEGRAL---RLNLASEREKP 301
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE
Length = 804
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 311 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 370
+++G LP + + L SFG + ++KDR TG SKGY F Y D+ + + A A+
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 371 NGIKMGDKTLTVRRANQ 387
NG + +TL VR A +
Sbjct: 542 NGYRFEGRTLAVRIAGK 558
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE
Length = 804
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 311 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 370
+++G LP + + L SFG + ++KDR TG SKGY F Y D+ + + A A+
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 371 NGIKMGDKTLTVRRANQ 387
NG + +TL VR A +
Sbjct: 542 NGYRFEGRTLAVRIAGK 558
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE
Length = 804
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 311 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 370
+++G LP + + L SFG + ++KDR TG SKGY F Y D+ + + A A+
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 371 NGIKMGDKTLTVRRANQ 387
NG + +TL VR A +
Sbjct: 542 NGYRFEGRTLAVRIAGK 558
>AT3G13224.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:4254848-4256621 FORWARD
Length = 358
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 299 PGSAGGLEGPD----RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAF 354
P AGG + D +IFVGG+P TE ++++ +G + +++D ET S+G+ F
Sbjct: 95 PKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGF 154
Query: 355 CVYQDLSVTDIACAALNGIKMGDKTLTVRRA 385
++ V D + N I M D + +++A
Sbjct: 155 VIFDSEEVVDELLSKGNMIDMADTQVEIKKA 185
>AT4G00830.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:352782-354965 FORWARD
Length = 495
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 311 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 370
+F+GGLP E +R+L E G + L+KDR++G+SKGYAF ++ V A L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 371 NGIKMGDKTL 380
+ + KT+
Sbjct: 178 HSKEFKGKTI 187
>AT4G00830.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:352782-354965 FORWARD
Length = 495
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 311 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 370
+F+GGLP E +R+L E G + L+KDR++G+SKGYAF ++ V A L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 371 NGIKMGDKTL 380
+ + KT+
Sbjct: 178 HSKEFKGKTI 187
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE
Length = 352
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 311 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 370
++VGG+P+ TE + + +G + +L++D+ TG SKG+AF Y+D T +A L
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 371 NGIKMGDKTLTVRRANQGANQPKPEQENVLLHAQQQIALQV 411
NG + +T+ V + K E+E+ Q + A V
Sbjct: 98 NGALVLGRTIKV---DHCGAYKKHEEEDEETRRQNREARGV 135
>AT3G13224.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:4254848-4256014 FORWARD
Length = 231
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 299 PGSAGGLEGPD----RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAF 354
P AGG + D +IFVGG+P TE ++++ +G + +++D ET S+G+ F
Sbjct: 95 PKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGF 154
Query: 355 CVYQDLSVTDIACAALNGIKMGDKTLTVRR 384
++ V D + N I M D +++ +
Sbjct: 155 VIFDSEEVVDELLSKGNMIDMADTQVSLYK 184
>AT3G52150.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19342074-19343090 FORWARD
Length = 253
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 23/204 (11%)
Query: 184 ATRHARRVYVGGLPPT-ANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVE 242
++ ARRVY+G +P T NEQ ++++ G + + Y ++F F
Sbjct: 71 SSEAARRVYIGNIPRTVTNEQ-----LTKLVEEHGA--VEKVQVMYDKYSGRSRRFGFAT 123
Query: 243 MRSVEEASNAM-ALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGS 301
M+SVE+A+ + L+G EG +KV T P +P+L++ L
Sbjct: 124 MKSVEDANAVVEKLNGNTVEGREIKVN----------ITEKPIASSPDLSV----LQSED 169
Query: 302 AGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLS 361
+ ++ P +++VG L T+ + L G + + + T S G+ F +
Sbjct: 170 SAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEE 229
Query: 362 VTDIACAALNGIKMGDKTLTVRRA 385
+ A ALN + + + V +A
Sbjct: 230 DVEAAIVALNNSLLEGQKIRVNKA 253
>AT3G52150.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19342074-19343090 FORWARD
Length = 253
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 23/204 (11%)
Query: 184 ATRHARRVYVGGLPPT-ANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVE 242
++ ARRVY+G +P T NEQ ++++ G + + Y ++F F
Sbjct: 71 SSEAARRVYIGNIPRTVTNEQ-----LTKLVEEHGA--VEKVQVMYDKYSGRSRRFGFAT 123
Query: 243 MRSVEEASNAM-ALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGS 301
M+SVE+A+ + L+G EG +KV T P +P+L++ L
Sbjct: 124 MKSVEDANAVVEKLNGNTVEGREIKVN----------ITEKPIASSPDLSV----LQSED 169
Query: 302 AGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLS 361
+ ++ P +++VG L T+ + L G + + + T S G+ F +
Sbjct: 170 SAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEE 229
Query: 362 VTDIACAALNGIKMGDKTLTVRRA 385
+ A ALN + + + V +A
Sbjct: 230 DVEAAIVALNNSLLEGQKIRVNKA 253
>AT5G40490.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:16225483-16227423 FORWARD
Length = 423
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 369
+IFVGG+P + + +E FG L+ +++D TG S+G+ F Y+ + D A
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAK 190
Query: 370 LNGIKMGDKTLTVRRA 385
N I++ + +++A
Sbjct: 191 GNRIELSGTQVEIKKA 206
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 285 QPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDR 344
+P+ ++ P S GG++ +IFVGGL T A+ + +G + ++KDR
Sbjct: 18 KPSEDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDR 77
Query: 345 ETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRA 385
+TG +G+ F Y D SV D N I +G K + ++R
Sbjct: 78 KTGQPRGFGFVTYADSSVVDKVIQD-NHIIIG-KQVEIKRT 116
>AT1G01080.2 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative |
chr1:45503-46789 REVERSE
Length = 294
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 13/145 (8%)
Query: 240 FVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLT 298
+V M S+ A A+A LDG G ++VR D NP ++ NP + + T
Sbjct: 154 YVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPG-------TRRNPEV----LNST 202
Query: 299 PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQ 358
P E +++VG LP++ +R FG + ++ DR+TG ++ +AF +
Sbjct: 203 PKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFT 262
Query: 359 DLSVTDIACAALNGIKMGDKTLTVR 383
D A + NG + + + VR
Sbjct: 263 SGEERD-AALSFNGTQYEGRRIIVR 286
>AT1G01080.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative |
chr1:45503-46789 REVERSE
Length = 293
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 13/145 (8%)
Query: 240 FVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLT 298
+V M S+ A A+A LDG G ++VR D NP ++ NP + + T
Sbjct: 153 YVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPG-------TRRNPEV----LNST 201
Query: 299 PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQ 358
P E +++VG LP++ +R FG + ++ DR+TG ++ +AF +
Sbjct: 202 PKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFT 261
Query: 359 DLSVTDIACAALNGIKMGDKTLTVR 383
D A + NG + + + VR
Sbjct: 262 SGEERD-AALSFNGTQYEGRRIIVR 285
>AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative |
chr2:15634980-15636331 REVERSE
Length = 289
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 369
++FVG LP+ AQ+ +L ES G + +++ D+ TG S+G+ F +S + A
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 370 LNGIKMGDKTLTVRRANQGANQPKPEQ 396
NG ++ + L R N G PK E
Sbjct: 152 FNGYELDGRPL---RVNAGPPPPKRED 175
>AT1G60650.2 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22340089-22342148 FORWARD
Length = 292
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 369
RIFVGGL + TE Q+ + +G + ++ R+TG +G+ F + D D A
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 370 LNGIKMGDKTLTVRRANQGANQPKPEQENV 399
++G ++G+K ++V +A +PK E+V
Sbjct: 73 MHGRELGNKVISVNKA-----EPKVGGEDV 97
>AT1G60650.1 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22340089-22342148 FORWARD
Length = 292
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 369
RIFVGGL + TE Q+ + +G + ++ R+TG +G+ F + D D A
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 370 LNGIKMGDKTLTVRRANQGANQPKPEQENV 399
++G ++G+K ++V +A +PK E+V
Sbjct: 73 MHGRELGNKVISVNKA-----EPKVGGEDV 97
>AT5G04280.1 | Symbols: | glycine-rich RNA-binding protein |
chr5:1192461-1195413 FORWARD
Length = 310
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 369
RIFVGGL T+ + FG + ++ +R+TG S+G+ F + D D +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 370 LNGIKMGDKTLTVRRANQGANQPKPEQENVLLHAQQ 405
++G GD+ ++V RA +PK +++ H +
Sbjct: 68 MHGRDFGDRVISVNRA-----EPKLGRDDGESHGSR 98
>AT2G46780.1 | Symbols: | RNA binding / nucleic acid binding /
nucleotide binding | chr2:19229516-19231043 FORWARD
Length = 336
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 369
+IFVGGL + +R E FG + ++ D+ TG SKGY F +++ AC
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 370 LNGIKMGDKTLTVRRAN-----QGANQPKP 394
+N + G RRAN GA +P+P
Sbjct: 83 MNPVIDG------RRANCNLACLGAQKPRP 106
>AT3G26420.1 | Symbols: ATRZ-1A | ATRZ-1A; RNA binding / nucleotide
binding | chr3:9671953-9673055 FORWARD
Length = 245
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 369
R F+GGL + ++ +R+ E +G L +V D+ +G S+G+ F + + D A AA
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 370 LNGIKMGDKTLTVRRA 385
+NG+ + +T+TV +A
Sbjct: 68 MNGMDLDGRTITVDKA 83
>AT4G13850.3 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-RICH RNA-BINDING
PROTEIN 2); ATP binding / RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr4:8021314-8022065 FORWARD
Length = 144
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 369
++F+GGL + +A +R+ FG + ++ DRETG S+G+ F + D A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 370 LNGIKMGDKTLTVRRANQGANQPK 393
++G ++ + + V AN + P+
Sbjct: 96 MDGKELNGRHIRVNPANDRPSAPR 119
>AT4G13850.2 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-RICH RNA-BINDING
PROTEIN 2); ATP binding / RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr4:8021314-8022065 FORWARD
Length = 153
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 369
++F+GGL + +A +R+ FG + ++ DRETG S+G+ F + D A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 370 LNGIKMGDKTLTVRRANQGANQPK 393
++G ++ + + V AN + P+
Sbjct: 96 MDGKELNGRHIRVNPANDRPSAPR 119
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | GR-RBP2
(GLYCINE-RICH RNA-BINDING PROTEIN 2); ATP binding / RNA
binding / double-stranded DNA binding / single-stranded
DNA binding | chr4:8021314-8022065 FORWARD
Length = 158
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 369
++F+GGL + +A +R+ FG + ++ DRETG S+G+ F + D A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 370 LNGIKMGDKTLTVRRANQGANQPK 393
++G ++ + + V AN + P+
Sbjct: 96 MDGKELNGRHIRVNPANDRPSAPR 119
>AT2G33440.1 | Symbols: | splicing factor family protein |
chr2:14170790-14173226 FORWARD
Length = 247
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 306 EGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDI 365
+ ++IF+GG + + E++ FGPL+ + V + + ++ AF Y D SVT
Sbjct: 37 DSSNKIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDL--NQRCAFLEYTDGSVTLK 94
Query: 366 ACAALNGIKMGDKTLT 381
ACA LNG+++G +T
Sbjct: 95 ACAGLNGMRLGGSVIT 110
>AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-binding
protein 3); ATP binding / RNA binding |
chr5:24560870-24562152 FORWARD
Length = 309
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 369
++F+GG+ Y E +RE +G + ++ DRETG S+G+ F + A A
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 370 LNGIKMGDKTLTVRRANQ 387
L+G + + + V AN
Sbjct: 101 LDGRDLHGRVVKVNYAND 118
>AT5G11412.1 | Symbols: | nucleic acid binding / nucleotide binding
| chr5:3640349-3640876 REVERSE
Length = 175
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 367
+I+VGGLP+ +R E FG + ++V DRETG S+GY F ++D AC
Sbjct: 53 KIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRAC 110
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | GR-RBP8; RNA
binding / nucleic acid binding / nucleotide binding |
chr4:18274166-18274958 REVERSE
Length = 169
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 369
R FVGGL + + ++ FG + ++ DRE+G S+G+ F ++D A
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 370 LNGIKMGDKTLTVRRA 385
+NG ++ + +TV A
Sbjct: 67 MNGKELDGRVITVNEA 82
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding /
nucleic acid binding / nucleotide binding |
chr4:18274166-18274958 REVERSE
Length = 92
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 369
R FVGGL + + ++ FG + ++ DRE+G S+G+ F ++D A
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 370 LNGIKMGDKTLTVRRA 385
+NG ++ + +TV A
Sbjct: 67 MNGKELDGRVITVNEA 82
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding /
nucleic acid binding / nucleotide binding |
chr4:18274166-18274958 REVERSE
Length = 126
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 369
R FVGGL + + ++ FG + ++ DRE+G S+G+ F ++D A
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 370 LNGIKMGDKTLTVRRA 385
+NG ++ + +TV A
Sbjct: 67 MNGKELDGRVITVNEA 82
>AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative |
chr1:22093678-22094540 REVERSE
Length = 258
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 38/201 (18%)
Query: 190 RVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHE----KKFAFVEMRS 245
++Y G LP + S +A I + A P +V V N + + FAFV M +
Sbjct: 86 KLYFGNLPYNVD--------SATLAQIIQDFANP--ELVEVLYNRDTGQSRGFAFVTMSN 135
Query: 246 VEEASNAMA-LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGG 304
VE+ + + LDG + G +KV +P PN L P
Sbjct: 136 VEDCNIIIDNLDGTEYLGRALKVNFAD-------------KPKPN----KEPLYP----- 173
Query: 305 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTD 364
E ++FVG L + T + G + G +V D +TG S+GY F Y + +
Sbjct: 174 -ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEME 232
Query: 365 IACAALNGIKMGDKTLTVRRA 385
A +L+G ++ + + V A
Sbjct: 233 TALESLDGFELEGRAIRVNLA 253
>AT4G13850.4 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-RICH RNA-BINDING
PROTEIN 2); ATP binding / RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr4:8021314-8022065 FORWARD
Length = 129
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 42/77 (54%)
Query: 310 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 369
++F+GGL + +A +R+ FG + ++ DRETG S+G+ F + D A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 370 LNGIKMGDKTLTVRRAN 386
++G ++ + + V AN
Sbjct: 96 MDGKELNGRHIRVNPAN 112