Jatropha Genome Database

JcCA0091211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0091211.10 - phase: 0 /pseudo/partial
         (243 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G44900.1 | Symbols: MCM2 | ATP binding / DNA binding / DNA-de...   271   2e-73
AT5G46280.1 | Symbols: MCM3 | DNA replication licensing factor, ...    96   3e-20
AT4G02060.1 | Symbols: PRL, MCM7 | PRL (PROLIFERA); ATP binding ...    80   1e-15
AT2G16440.1 | Symbols: MCM4 | DNA replication licensing factor, ...    77   8e-15
AT2G07690.1 | Symbols: MCM5 | minichromosome maintenance family ...    74   1e-13
AT3G09660.1 | Symbols: MCM8 | MCM8; ATP binding / DNA binding / ...    72   2e-13
AT2G14050.1 | Symbols: MCM9 | MCM9; ATP binding / DNA binding / ...    64   8e-11
AT5G44635.1 | Symbols: MCM6 | minichromosome maintenance family ...    61   6e-10

>AT1G44900.1 | Symbols: MCM2 | ATP binding / DNA binding /
           DNA-dependent ATPase | chr1:16970291-16974457 FORWARD
          Length = 936

 Score =  271 bits (694), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 132/157 (84%), Positives = 144/157 (91%), Gaps = 7/157 (4%)

Query: 80  RNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKN 139
           RNYQKLT+QESPG VPAGRLPR+KEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKN
Sbjct: 397 RNYQKLTIQESPGTVPAGRLPRHKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKN 456

Query: 140 GFPVFATVIEANHVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHED 199
           GFPVFATV+EAN+VTKKQDLFSAYKLTQEDK +IE+L+KDPRI ERIIKSIAPSIYGHED
Sbjct: 457 GFPVFATVVEANYVTKKQDLFSAYKLTQEDKTQIEELSKDPRIVERIIKSIAPSIYGHED 516

Query: 200 IKTAIALAMFGGQEKNVRRXDTGSE---GTVNVLLMG 233
           IKTA+ALAMFGGQEKN++    G     G +NVLL+G
Sbjct: 517 IKTALALAMFGGQEKNIK----GKHRLRGDINVLLLG 549


>AT5G46280.1 | Symbols: MCM3 | DNA replication licensing factor,
           putative | chr5:18769902-18773606 REVERSE
          Length = 776

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 91/154 (59%), Gaps = 3/154 (1%)

Query: 80  RNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKN 139
           +++Q L++QE P     G+LPR  +VI  +DL+D  +PG+ + V GIY      S  + N
Sbjct: 185 KDHQTLSIQEVPENAAPGQLPRSVDVIAEDDLVDSCKPGDRVSVFGIYKALPGKSKGSVN 244

Query: 140 GFPVFATVIEANHVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHED 199
           G  VF T++ AN++       +A   T++D + I+ +A+     + + +S+APSIYGH  
Sbjct: 245 G--VFRTILIANNIALLNKEANAPIYTKQDLDNIKNIARRDDAFDLLARSLAPSIYGHAW 302

Query: 200 IKTAIALAMFGGQEKNVRRXDTGSEGTVNVLLMG 233
           IK A+ L M GG EKN++   T   G +N++++G
Sbjct: 303 IKKAVVLLMLGGVEKNLKN-GTHLRGDINMMMVG 335


>AT4G02060.1 | Symbols: PRL, MCM7 | PRL (PROLIFERA); ATP binding /
           DNA binding / DNA-dependent ATPase/
           nucleoside-triphosphatase/ nucleotide binding |
           chr4:901484-905297 FORWARD
          Length = 716

 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 79/152 (51%), Gaps = 1/152 (0%)

Query: 82  YQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGF 141
           +Q+  +QE    VP G +PR   V L  +L     PG+ +E +GI+              
Sbjct: 226 FQEAKMQELAEHVPKGHIPRSMTVHLRGELTRKVSPGDVVEFSGIFLPIPYTGFKALRAG 285

Query: 142 PVFATVIEANHVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIK 201
            V  T +EA  VT  +  +  Y+  ++++E+I +LA+D  I  ++ +S+AP IYGHEDIK
Sbjct: 286 LVADTYLEATSVTHFKKKYEEYEFQKDEEEQIARLAEDGDIYNKLSRSLAPEIYGHEDIK 345

Query: 202 TAIALAMFGGQEKNVRRXDTGSEGTVNVLLMG 233
            A+ L + G   + ++       G V++ LMG
Sbjct: 346 KALLLLLVGAPHRQLKD-GMKIRGDVHICLMG 376


>AT2G16440.1 | Symbols: MCM4 | DNA replication licensing factor,
           putative | chr2:7126536-7130665 REVERSE
          Length = 847

 Score = 77.4 bits (189), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 91/179 (50%), Gaps = 23/179 (12%)

Query: 81  NYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIY-TNNFDLSLNTKN 139
           + Q + LQE+P  +P G  P    ++L + L+D  +PG+ IEVTGIY      +    + 
Sbjct: 316 DKQIVRLQETPDEIPEGGTPHTVSLLLHDKLVDNGKPGDRIEVTGIYRAMTVRVGPAHRT 375

Query: 140 GFPVFATVIEANHVTK----------KQDLFSAYKLTQEDKE-------EIEKLAKDPRI 182
              VF T I+  H+ K            D+ ++ +   ED E       + ++L+K P I
Sbjct: 376 VKSVFKTYIDCLHIKKASKLRMSAEDPMDVDNSLRRVDEDVELDEEKLRKFQELSKQPDI 435

Query: 183 GERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVRRXDTGS--EGTVNVLLMGRSRHSK 239
            ER+ +S+AP+I+  +D+K  +   +FGG   N+    +G+   G +N+LL+G    SK
Sbjct: 436 YERLSRSLAPNIWELDDVKKGLLCQLFGGNALNLA---SGANFRGDINILLVGDPGTSK 491


>AT2G07690.1 | Symbols: MCM5 | minichromosome maintenance family
           protein / MCM family protein | chr2:3523379-3527388
           REVERSE
          Length = 727

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 13/167 (7%)

Query: 81  NYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYT--------NNFD 132
           + Q L LQE+P  VP G LPR   + +   L+    PG  + V GIY+        N+  
Sbjct: 220 DQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTVMGIYSIFQASSSSNSHK 279

Query: 133 LSLNTKNGFPVFATVIEANHVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAP 192
            ++  +  +     + + N  + +         T +++EE +K A    + + I   IAP
Sbjct: 280 GAVAIRQPYIRVVGLEDTNEASSR----GPANFTPDEEEEFKKFADSQDVYKNICTKIAP 335

Query: 193 SIYGHEDIKTAIALAMFGGQEKNVRRXDTGSEGTVNVLLMGRSRHSK 239
           SI+GHED+K A A  +FGG  K++        G +NVLL+G    +K
Sbjct: 336 SIFGHEDVKRAAACLLFGGSRKSLPD-GVKLRGDINVLLLGDPSTAK 381


>AT3G09660.1 | Symbols: MCM8 | MCM8; ATP binding / DNA binding /
           DNA-dependent ATPase/ nucleoside-triphosphatase/
           nucleotide binding | chr3:2961314-2966166 REVERSE
          Length = 777

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 91/183 (49%), Gaps = 32/183 (17%)

Query: 81  NYQKLTLQE--SPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGI--YTNNF-DLS- 134
           ++QK+ +QE   P     GR+PR  E  L+ DL+D   PG+ + VTGI    NN+ D+  
Sbjct: 223 DFQKIRVQELQKPEDHEEGRVPRTVECELMEDLVDICIPGDVVTVTGIIGVINNYMDIGG 282

Query: 135 --LNTKN-GFPVFATVIEANHV--TKKQDLF----------------SAYKLTQEDKEEI 173
               TKN GF  +   IEA  V  TK+Q  F                  Y  +Q D E I
Sbjct: 283 GKSKTKNQGF--YYLFIEAVSVKNTKRQSAFENSEDSSSSAQTADVGDLYSFSQRDLEFI 340

Query: 174 EKLAKD--PRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEK-NVRRXDTGSEGTVNVL 230
            K  ++       RI+ S+ PSIYGHE +K  I L++FGG  K ++ R      G ++V+
Sbjct: 341 VKFKEEYGSDTFRRILHSVCPSIYGHEIVKAGITLSLFGGVRKHSMDRNKVPVRGDIHVI 400

Query: 231 LMG 233
           ++G
Sbjct: 401 IVG 403


>AT2G14050.1 | Symbols: MCM9 | MCM9; ATP binding / DNA binding /
           DNA-dependent ATPase/ nucleoside-triphosphatase/
           nucleotide binding | chr2:5909240-5913817 FORWARD
          Length = 646

 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 95/181 (52%), Gaps = 10/181 (5%)

Query: 58  QKSKLALALNANQKDHLLLTXSRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARP 117
           Q+SK     N +  D  +     +YQ++ +QE+  ++  G +PR   V+L +DL+D  + 
Sbjct: 183 QRSKACEGTNFDPVDDTVT--RHDYQEIKIQENTQVLGVGVIPRSILVVLKDDLVDNVKA 240

Query: 118 GEEIEVTGIYTNNFDLSLNTKNGFPVFATVIEANHVTKKQDLFSAYKLTQEDKEEIEKLA 177
           G+++ V+GI T+ +  S + K+       ++ ANHV +  +L S   ++ +  E+ +   
Sbjct: 241 GDDVVVSGILTSKW--SHDLKDVRCDLEPMLIANHVRRTNELKSEIDISDDLIEKFKNFW 298

Query: 178 ---KDPRIGER--IIKSIAPSIYGHEDIKTAIALAMFGGQEKNVRRXDTGSEGTVNVLLM 232
              +D  +  R  I++ I P ++G   +K A+AL + GG + +V    T   G  ++LL+
Sbjct: 299 SHFRDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQ-HVDASGTKVRGESHLLLI 357

Query: 233 G 233
           G
Sbjct: 358 G 358


>AT5G44635.1 | Symbols: MCM6 | minichromosome maintenance family
           protein / MCM family protein | chr5:18006431-18010542
           REVERSE
          Length = 831

 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 85/198 (42%), Gaps = 46/198 (23%)

Query: 81  NYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNG 140
           ++Q++ +QE+   +PAG LPR  +VIL +++++ AR G+ +  TG      D+S     G
Sbjct: 199 DWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDTVIFTGTVVVIPDISALAAPG 258

Query: 141 ------------------------------------FPVFATVIEANHVTKKQDLFS--- 161
                                                   A  ++    ++  D+ +   
Sbjct: 259 ERAECRRDSSQQKSSTAGHEGVQGLKALGVRDLSYRLAFIANSVQIADGSRNTDMRNRQN 318

Query: 162 ------AYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKN 215
                   + T E+ +EI+++   P    +++ S+AP+++GH+DIK A+ L + GG  K 
Sbjct: 319 DSNEDDQQQFTAEELDEIQQMRNTPDYFNKLVGSMAPTVFGHQDIKRAVLLMLLGGVHKT 378

Query: 216 VRRXDTGSEGTVNVLLMG 233
                    G +NV ++G
Sbjct: 379 THE-GINLRGDINVCIVG 395