Jatropha Genome Database
- JcCA0088981.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0088981.10 + phase: 1 /pseudo/partial
(118 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G51100.1 | Symbols: FSD2 | FSD2 (FE SUPEROXIDE DISMUTASE 2); ... 116 3e-27
AT4G25100.4 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1); ... 106 4e-24
AT4G25100.2 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1); ... 106 4e-24
AT4G25100.3 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1); ... 106 4e-24
AT4G25100.1 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1); ... 106 4e-24
AT5G23310.1 | Symbols: FSD3 | FSD3 (FE SUPEROXIDE DISMUTASE 3); ... 85 8e-18
AT3G10920.2 | Symbols: MSD1 | MSD1 (MANGANESE SUPEROXIDE DISMUTA... 53 4e-08
AT3G10920.1 | Symbols: MSD1, MEE33, ATMSD1 | MSD1 (MANGANESE SUP... 53 4e-08
>AT5G51100.1 | Symbols: FSD2 | FSD2 (FE SUPEROXIDE DISMUTASE 2);
superoxide dismutase | chr5:20773357-20775635 REVERSE
Length = 305
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 70/106 (66%), Gaps = 3/106 (2%)
Query: 13 KKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISTFIEKLVSWEAVSAR 72
KKLV+VK+PNAVNPLVWDYSPLLTID WEHAYYLDF+NRR +YI+TF+EKLVSWE VS R
Sbjct: 203 KKLVIVKTPNAVNPLVWDYSPLLTIDTWEHAYYLDFENRRAEYINTFMEKLVSWETVSTR 262
Query: 73 LXXXXXXXXXXXXXXXXXXXXXXXSVPGSEAAELYVDSESEDSEAE 118
L P E E+Y+DS+ + SE +
Sbjct: 263 LESAIARAVQREQEGTETEDEEN---PDDEVPEVYLDSDIDVSEVD 305
>AT4G25100.4 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1);
copper ion binding / superoxide dismutase |
chr4:12884649-12885660 REVERSE
Length = 186
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 53/62 (85%)
Query: 12 TKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISTFIEKLVSWEAVSA 71
+KL VVK+PNAVNPLV PLLTIDVWEHAYYLDFQNRRPDYI TF+ LVSWEAVSA
Sbjct: 117 NEKLKVVKTPNAVNPLVLGSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSA 176
Query: 72 RL 73
RL
Sbjct: 177 RL 178
>AT4G25100.2 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1);
copper ion binding / superoxide dismutase |
chr4:12884649-12886501 REVERSE
Length = 212
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 53/62 (85%)
Query: 12 TKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISTFIEKLVSWEAVSA 71
+KL VVK+PNAVNPLV PLLTIDVWEHAYYLDFQNRRPDYI TF+ LVSWEAVSA
Sbjct: 143 NEKLKVVKTPNAVNPLVLGSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSA 202
Query: 72 RL 73
RL
Sbjct: 203 RL 204
>AT4G25100.3 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1);
copper ion binding / superoxide dismutase |
chr4:12884649-12886501 REVERSE
Length = 212
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 53/62 (85%)
Query: 12 TKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISTFIEKLVSWEAVSA 71
+KL VVK+PNAVNPLV PLLTIDVWEHAYYLDFQNRRPDYI TF+ LVSWEAVSA
Sbjct: 143 NEKLKVVKTPNAVNPLVLGSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSA 202
Query: 72 RL 73
RL
Sbjct: 203 RL 204
>AT4G25100.1 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1);
copper ion binding / superoxide dismutase |
chr4:12884649-12886501 REVERSE
Length = 212
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 53/62 (85%)
Query: 12 TKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISTFIEKLVSWEAVSA 71
+KL VVK+PNAVNPLV PLLTIDVWEHAYYLDFQNRRPDYI TF+ LVSWEAVSA
Sbjct: 143 NEKLKVVKTPNAVNPLVLGSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSA 202
Query: 72 RL 73
RL
Sbjct: 203 RL 204
>AT5G23310.1 | Symbols: FSD3 | FSD3 (FE SUPEROXIDE DISMUTASE 3);
superoxide dismutase | chr5:7850624-7852241 FORWARD
Length = 263
Score = 85.1 bits (209), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 53/69 (76%), Gaps = 2/69 (2%)
Query: 5 ILARQKRTKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISTFIEKLV 64
+L R++R +L VVK+ NA+NPLVWD P++ +DVWEH+YYLD++N R YI+TF+ LV
Sbjct: 180 VLKREER--RLEVVKTSNAINPLVWDDIPIICVDVWEHSYYLDYKNDRAKYINTFLNHLV 237
Query: 65 SWEAVSARL 73
SW A +R+
Sbjct: 238 SWNAAMSRM 246
>AT3G10920.2 | Symbols: MSD1 | MSD1 (MANGANESE SUPEROXIDE DISMUTASE
1); metal ion binding / superoxide dismutase |
chr3:3418015-3419581 FORWARD
Length = 230
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 6 LARQKRTKKLVVVKSPNAVNPLVWDYS---PLLTIDVWEHAYYLDFQNRRPDYISTFIEK 62
L K KKLVV + N +PLV PL+ IDVWEHAYYL ++N RP+Y+ + K
Sbjct: 157 LGLDKELKKLVVDTTANQ-DPLVTKGGSLVPLVGIDVWEHAYYLQYKNVRPEYLKN-VWK 214
Query: 63 LVSWEAVS 70
+++W+ S
Sbjct: 215 VINWKYAS 222
>AT3G10920.1 | Symbols: MSD1, MEE33, ATMSD1 | MSD1 (MANGANESE
SUPEROXIDE DISMUTASE 1); metal ion binding / superoxide
dismutase | chr3:3418015-3419581 FORWARD
Length = 231
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 6 LARQKRTKKLVVVKSPNAVNPLVWDYS---PLLTIDVWEHAYYLDFQNRRPDYISTFIEK 62
L K KKLVV + N +PLV PL+ IDVWEHAYYL ++N RP+Y+ + K
Sbjct: 158 LGLDKELKKLVVDTTANQ-DPLVTKGGSLVPLVGIDVWEHAYYLQYKNVRPEYLKN-VWK 215
Query: 63 LVSWEAVS 70
+++W+ S
Sbjct: 216 VINWKYAS 223